Schistosoma mansoni lncRNAs Database

This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068,

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

Smp_059210.2 Data

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC06021-IBu 0 0.49 1.13 -8.68 -8.68
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
Smp_059210.2 0 -0.42 -0.55 -4.87 -6.09

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059210.2 SmLINC02038-IBu 0.89 5.18e-06 1.00e-04
Smp_059210.2 SmLINC06021-IBu 0.81 1.00e-04 2.20e-03
Smp_059210.2 SmLINC06489-IBu 0.80 3.00e-04 3.30e-03