Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_059210.1 Data

Correlation between Smp_059210.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_059210.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_059210.1 0 -0.90 -1.25 -4.03 -5.25

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059210.1 SmLINC00001-IBu -0.85 4.48e-05 7.00e-04
Smp_059210.1 SmLINC00004-IBu -0.86 3.08e-05 6.00e-04
Smp_059210.1 SmLINC00369-IBu -0.85 4.56e-05 7.00e-04
Smp_059210.1 SmLINC00376-IBu -0.83 1.00e-04 1.50e-03
Smp_059210.1 SmLINC01084-IBu -0.83 9.31e-05 1.30e-03
Smp_059210.1 SmLINC01431-IBu -0.87 1.89e-05 4.00e-04
Smp_059210.1 SmLINC01432-IBu -0.82 1.00e-04 1.70e-03
Smp_059210.1 SmLINC02084-IBu -0.85 3.99e-05 7.00e-04
Smp_059210.1 SmLINC02255-IBu 0.85 3.95e-05 7.00e-04
Smp_059210.1 SmLINC02394-IBu -0.82 1.00e-04 1.70e-03
Smp_059210.1 SmLINC02539-IBu -0.80 3.00e-04 3.10e-03
Smp_059210.1 SmLINC02546-IBu -0.81 2.00e-04 2.50e-03
Smp_059210.1 SmLINC02630-IBu 0.89 6.15e-06 1.00e-04
Smp_059210.1 SmLINC03927-IBu -0.81 2.00e-04 2.30e-03
Smp_059210.1 SmLINC04421-IBu -0.88 1.33e-05 3.00e-04
Smp_059210.1 SmLINC04423-IBu -0.82 1.00e-04 1.70e-03
Smp_059210.1 SmLINC04521-IBu -0.81 2.00e-04 2.70e-03
Smp_059210.1 SmLINC05147-IBu -0.82 1.00e-04 2.10e-03
Smp_059210.1 SmLINC05274-IBu 0.86 2.73e-05 5.00e-04
Smp_059210.1 SmLINC05284-IBu 0.86 3.63e-05 6.00e-04
Smp_059210.1 SmLINC05289-IBu -0.84 8.01e-05 1.20e-03
Smp_059210.1 SmLINC05604-IBu -0.85 4.73e-05 8.00e-04
Smp_059210.1 SmLINC05989-IBu 0.80 2.00e-04 2.80e-03
Smp_059210.1 SmLINC06024-IBu -0.82 1.00e-04 1.90e-03
Smp_059210.1 SmLINC06535-IBu 0.83 1.00e-04 1.60e-03

Correlation between Smp_059210.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_059210.1 0 -0.90 -1.25 -4.03 -5.25
Smp_169670.1 0 0.00 8.19 10.09 10.85

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059210.1 Smp_015850.2 0.92 6.35e-07 3.88e-05
Smp_050350.3 Smp_059210.1 -0.90 3.51e-06 1.00e-04
Smp_169670.1 Smp_059210.1 -0.90 4.16e-06 1.00e-04