Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_058680.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
Smp_058680.1 0 -0.24 -3.97 -6.58 -7.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_058680.1 SmLINC00037-IBu 0.82 1.00e-04 1.80e-03
Smp_058680.1 SmLINC00133-IBu 0.81 1.00e-04 2.10e-03
Smp_058680.1 SmLINC00282-IBu 0.81 2.00e-04 2.30e-03
Smp_058680.1 SmLINC00554-IBu 0.94 6.69e-08 7.78e-06
Smp_058680.1 SmLINC00556-IBu 0.85 5.93e-05 9.00e-04
Smp_058680.1 SmLINC00893-IBu 0.86 2.68e-05 5.00e-04
Smp_058680.1 SmLINC01462-IBu 0.80 3.00e-04 3.10e-03
Smp_058680.1 SmLINC04129-IBu 0.80 2.00e-04 3.10e-03
Smp_058680.1 SmLINC04271-IBu 0.83 1.00e-04 1.50e-03
Smp_058680.1 SmLINC05840-IBu 0.86 3.68e-05 6.00e-04
Smp_058680.1 SmLINC05887-IBu 0.81 2.00e-04 2.60e-03
Smp_058680.1 SmLINC06138-IBu 0.82 1.00e-04 1.90e-03