Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_058380.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
Smp_058380.1 0 -3.00 -1.12 1.62 2.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_058380.1 SmLINC04366-IBu -0.58 2.25e-02 6.25e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_058380.1 0 -3.00 -1.12 1.62 2.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_058380.1 SmLINC00001-IBu 0.85 4.95e-05 8.00e-04
Smp_058380.1 SmLINC00004-IBu 0.88 1.03e-05 2.00e-04
Smp_058380.1 SmLINC00007-IBu 0.82 1.00e-04 1.80e-03
Smp_058380.1 SmLINC00266-IBu 0.88 1.34e-05 3.00e-04
Smp_058380.1 SmLINC00294-IBu -0.81 1.00e-04 2.30e-03
Smp_058380.1 SmLINC00369-IBu 0.85 5.13e-05 8.00e-04
Smp_058380.1 SmLINC00525-IBu 0.94 1.14e-07 1.12e-05
Smp_058380.1 SmLINC00633-IBu 0.84 6.45e-05 1.00e-03
Smp_058380.1 SmLINC01084-IBu 0.93 3.05e-07 2.23e-05
Smp_058380.1 SmLINC01122-IBu 0.81 2.00e-04 2.40e-03
Smp_058380.1 SmLINC01431-IBu 0.88 1.38e-05 3.00e-04
Smp_058380.1 SmLINC01432-IBu 0.86 2.97e-05 5.00e-04
Smp_058380.1 SmLINC01435-IBu 0.81 2.00e-04 2.70e-03
Smp_058380.1 SmLINC01520-IBu 0.87 1.66e-05 3.00e-04
Smp_058380.1 SmLINC01569-IBu 0.81 2.00e-04 2.30e-03
Smp_058380.1 SmLINC02029-IBu 0.84 6.68e-05 1.00e-03
Smp_058380.1 SmLINC02084-IBu 0.91 1.30e-06 6.18e-05
Smp_058380.1 SmLINC02394-IBu 0.82 1.00e-04 1.80e-03
Smp_058380.1 SmLINC02539-IBu 0.89 5.19e-06 1.00e-04
Smp_058380.1 SmLINC02540-IBu 0.86 3.63e-05 6.00e-04
Smp_058380.1 SmLINC02545-IBu 0.93 3.86e-07 2.62e-05
Smp_058380.1 SmLINC02546-IBu 0.84 6.77e-05 1.00e-03
Smp_058380.1 SmLINC02577-IBu 0.86 3.86e-05 7.00e-04
Smp_058380.1 SmLINC03108-IBu 0.84 6.73e-05 1.00e-03
Smp_058380.1 SmLINC03849-IBu -0.84 6.92e-05 1.00e-03
Smp_058380.1 SmLINC03927-IBu 0.96 8.33e-09 1.89e-06
Smp_058380.1 SmLINC04421-IBu 0.94 1.32e-07 1.24e-05
Smp_058380.1 SmLINC04423-IBu 0.82 1.00e-04 1.90e-03
Smp_058380.1 SmLINC04478-IBu 0.80 2.00e-04 2.70e-03
Smp_058380.1 SmLINC04896-IBu 0.81 2.00e-04 2.60e-03
Smp_058380.1 SmLINC05147-IBu 0.82 1.00e-04 2.00e-03
Smp_058380.1 SmLINC05289-IBu 0.89 6.45e-06 1.00e-04
Smp_058380.1 SmLINC05604-IBu 0.94 6.86e-08 7.92e-06
Smp_058380.1 SmLINC05684-IBu 0.80 3.00e-04 3.30e-03
Smp_058380.1 SmLINC06024-IBu 0.90 2.73e-06 1.00e-04
Smp_058380.1 SmLINC06490-IBu -0.80 3.00e-04 3.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_058380.1 0 -3.00 -1.12 1.62 2.51
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_196830.1 0 -0.76 0.59 8.97 10.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033260.1 Smp_058380.1 0.90 2.55e-06 1.00e-04
Smp_058380.1 Smp_037720.1 0.91 2.00e-06 8.71e-05
Smp_058380.1 Smp_056460.1 0.94 1.08e-07 1.14e-05
Smp_058380.1 Smp_095410.1 0.91 1.92e-06 8.46e-05
Smp_058380.1 Smp_137810.1 0.90 4.48e-06 1.00e-04
Smp_058380.1 Smp_140720.1 0.90 2.71e-06 1.00e-04
Smp_058380.1 Smp_172960.1 0.91 2.32e-06 9.66e-05
Smp_058380.1 Smp_192780.1 0.92 1.00e-06 5.34e-05
Smp_194860.1 Smp_058380.1 0.91 2.23e-06 9.41e-05
Smp_196830.1 Smp_058380.1 0.91 1.98e-06 8.66e-05