Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

  1. Home
  2. Smp_058360.2

Smp_058360.2 Data

Correlation between Smp_058360.2 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_058360.2 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
Smp_058360.2 0 -2.02 -6.41 -4.83 -10.18

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_058360.2 SmLINC02039-IBu 0.84 6.58e-05 1.00e-03
Smp_058360.2 SmLINC05989-IBu 0.83 9.27e-05 1.30e-03

Correlation between Smp_058360.2 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC04864-IBu 0 -1.31 -6.10 -2.71 -3.51
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01
Smp_026450.1 0 -1.24 -2.94 -5.88 -5.90
Smp_033000.1 0 -1.72 -11.37 -13.15 -11.62
Smp_058360.2 0 -2.02 -6.41 -4.83 -10.18
Smp_062720.3 0 -1.21 -5.22 -6.55 -7.88
Smp_096290.2 0 -2.27 -6.00 -3.25 -2.18
Smp_119730.1 0 -2.59 -2.93 -5.18 -4.91
Smp_165180.1 0 -1.47 -9.43 -12.79 -7.00
Smp_205970.1 0 -3.84 -6.54 -6.54 -6.54

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_058360.2 SmLINC04864-IBu 0.90 2.54e-06 1.00e-04
Smp_016200.1 Smp_058360.2 0.93 2.65e-07 2.11e-05
Smp_026450.1 Smp_058360.2 0.95 4.57e-08 6.35e-06
Smp_033000.1 Smp_058360.2 0.90 3.68e-06 1.00e-04
Smp_062720.3 Smp_058360.2 0.92 6.52e-07 3.95e-05
Smp_096290.2 Smp_058360.2 0.96 1.11e-08 2.45e-06
Smp_119730.1 Smp_058360.2 0.95 2.10e-08 3.75e-06
Smp_165180.1 Smp_058360.2 0.91 1.37e-06 6.68e-05
Smp_205970.1 Smp_058360.2 0.90 2.57e-06 1.00e-04