Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_058170.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06021-IBu 0 0.49 1.13 -8.68 -8.68
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_058170.1 0 -0.02 0.05 -6.42 -4.35

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_058170.1 SmLINC00004-IBu -0.82 1.00e-04 1.90e-03
Smp_058170.1 SmLINC00294-IBu 0.80 2.00e-04 2.90e-03
Smp_058170.1 SmLINC00369-IBu -0.83 1.00e-04 1.50e-03
Smp_058170.1 SmLINC00525-IBu -0.85 4.42e-05 7.00e-04
Smp_058170.1 SmLINC00633-IBu -0.80 3.00e-04 3.30e-03
Smp_058170.1 SmLINC01084-IBu -0.87 2.29e-05 4.00e-04
Smp_058170.1 SmLINC01316-IBu 0.82 1.00e-04 1.80e-03
Smp_058170.1 SmLINC01431-IBu -0.85 4.59e-05 8.00e-04
Smp_058170.1 SmLINC02084-IBu -0.83 9.22e-05 1.30e-03
Smp_058170.1 SmLINC02546-IBu -0.80 2.00e-04 3.10e-03
Smp_058170.1 SmLINC03395-IBu 0.86 3.88e-05 7.00e-04
Smp_058170.1 SmLINC04074-IBu 0.82 1.00e-04 2.10e-03
Smp_058170.1 SmLINC04421-IBu -0.84 7.41e-05 1.10e-03
Smp_058170.1 SmLINC04423-IBu -0.81 2.00e-04 2.50e-03
Smp_058170.1 SmLINC04478-IBu -0.81 2.00e-04 2.50e-03
Smp_058170.1 SmLINC04521-IBu -0.80 2.00e-04 3.00e-03
Smp_058170.1 SmLINC05147-IBu -0.81 1.00e-04 2.20e-03
Smp_058170.1 SmLINC05289-IBu -0.80 3.00e-04 3.20e-03
Smp_058170.1 SmLINC05604-IBu -0.82 1.00e-04 2.10e-03
Smp_058170.1 SmLINC06021-IBu 0.84 6.81e-05 1.00e-03
Smp_058170.1 SmLINC06024-IBu -0.87 1.88e-05 4.00e-04
Smp_058170.1 SmLINC06490-IBu 0.89 5.65e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_058170.1 0 -0.02 0.05 -6.42 -4.35
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_038870.2 Smp_058170.1 -0.9 4.26e-06 1.00e-04
Smp_058170.1 Smp_212510.1 0.9 3.26e-06 1.00e-04