Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_056700.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_056700.1 0 -0.74 -1.75 0.30 4.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_056700.1 SmLINC00001-IBu 0.81 2.00e-04 2.60e-03
Smp_056700.1 SmLINC02029-IBu 0.80 2.00e-04 2.90e-03
Smp_056700.1 SmLINC02376-IBu 0.87 2.22e-05 4.00e-04
Smp_056700.1 SmLINC02783-IBu 0.83 1.00e-04 1.40e-03
Smp_056700.1 SmLINC04235-IBu 0.92 5.54e-07 3.38e-05
Smp_056700.1 SmLINC04627-IBu 0.89 8.38e-06 2.00e-04
Smp_056700.1 SmLINC05404-IBu 0.84 7.88e-05 1.10e-03
Smp_056700.1 SmLINC05684-IBu 0.85 5.95e-05 9.00e-04
Smp_056700.1 SmLINC06239-IBu 0.97 8.21e-10 4.15e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_056700.1 0 -0.74 -1.75 0.30 4.19
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_191910.1 0 -4.11 -4.11 6.38 13.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_056700.1 0.99 2.29e-14 6.57e-10
Smp_056700.1 Smp_000410.1 0.94 1.19e-07 1.21e-05
Smp_056700.1 Smp_000420.1 0.96 5.05e-09 1.45e-06
Smp_004420.3 Smp_056700.1 0.93 3.68e-07 2.65e-05
Smp_056700.1 Smp_033250.1 0.95 3.16e-08 4.95e-06
Smp_056700.1 Smp_058160.1 0.92 1.14e-06 5.87e-05
Smp_056700.1 Smp_077920.1 0.96 6.30e-09 1.68e-06
Smp_056700.1 Smp_130970.1 0.98 5.03e-12 1.80e-08
Smp_056700.1 Smp_131110.2 0.97 2.10e-09 8.22e-07
Smp_137460.1 Smp_056700.1 0.92 5.36e-07 3.45e-05
Smp_056700.1 Smp_137700.1 0.93 4.28e-07 2.95e-05
Smp_056700.1 Smp_138360.1 0.95 2.30e-08 3.99e-06
Smp_056700.1 Smp_144440.1 0.98 2.07e-12 1.03e-08
Smp_056700.1 Smp_155310.1 0.96 1.40e-08 2.85e-06
Smp_056700.1 Smp_155310.2 0.90 2.66e-06 1.00e-04
Smp_056700.1 Smp_159650.1 0.90 2.99e-06 1.00e-04
Smp_175560.1 Smp_056700.1 0.98 5.35e-11 7.85e-08
Smp_056700.1 Smp_191910.1 0.96 3.84e-09 1.21e-06