Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_056680.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_056680.3 0 0.01 -3.20 -6.32 -3.44

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_056680.3 SmLINC00037-IBu 0.87 2.37e-05 4.00e-04
Smp_056680.3 SmLINC00133-IBu 0.90 4.09e-06 1.00e-04
Smp_056680.3 SmLINC00282-IBu 0.89 8.55e-06 2.00e-04
Smp_056680.3 SmLINC00784-IBu 0.85 4.89e-05 8.00e-04
Smp_056680.3 SmLINC01462-IBu 0.80 2.00e-04 2.80e-03
Smp_056680.3 SmLINC01486-IBu 0.87 1.57e-05 3.00e-04
Smp_056680.3 SmLINC01637-IBu 0.81 2.00e-04 2.40e-03
Smp_056680.3 SmLINC03056-IBu 0.82 1.00e-04 2.00e-03
Smp_056680.3 SmLINC03362-IBu 0.82 1.00e-04 2.10e-03
Smp_056680.3 SmLINC03848-IBu 0.87 1.84e-05 4.00e-04
Smp_056680.3 SmLINC03930-IBu 0.92 7.85e-07 4.32e-05
Smp_056680.3 SmLINC04075-IBu 0.82 1.00e-04 1.80e-03
Smp_056680.3 SmLINC04178-IBu 0.80 3.00e-04 3.30e-03
Smp_056680.3 SmLINC04366-IBu 0.84 6.12e-05 9.00e-04
Smp_056680.3 SmLINC05716-IBu 0.87 2.13e-05 4.00e-04
Smp_056680.3 SmLINC05720-IBu 0.84 6.04e-05 9.00e-04
Smp_056680.3 SmLINC06210-IBu 0.81 2.00e-04 2.60e-03
Smp_056680.3 SmLINC06535-IBu 0.87 1.77e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_056680.3 0 0.01 -3.20 -6.32 -3.44
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_083340.4 0 -0.76 -5.02 -9.88 -12.95
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
Smp_201750.1 0 -0.56 -4.79 -7.34 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_056680.3 Smp_032970.1 0.97 3.55e-10 2.62e-07
Smp_056680.3 Smp_036270.4 0.91 2.13e-06 9.11e-05
Smp_056680.3 Smp_067980.1 0.91 2.07e-06 8.92e-05
Smp_077690.1 Smp_056680.3 0.93 3.55e-07 2.59e-05
Smp_056680.3 Smp_083340.4 0.90 3.52e-06 1.00e-04
Smp_125070.1 Smp_056680.3 0.92 6.08e-07 3.76e-05
Smp_056680.3 Smp_140680.2 0.90 2.72e-06 1.00e-04
Smp_056680.3 Smp_168080.2 0.91 1.74e-06 7.91e-05
Smp_056680.3 Smp_182090.1 0.96 1.12e-08 2.46e-06
Smp_201750.1 Smp_056680.3 0.92 7.48e-07 4.35e-05