Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_056560.1 Data

Correlation between Smp_056560.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_056560.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_056560.1 0 3.59 5.75 9.31 7.81

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_056560.1 SmLINC00171-IBu 0.93 1.99e-07 1.65e-05
Smp_056560.1 SmLINC00369-IBu 0.83 1.00e-04 1.60e-03
Smp_056560.1 SmLINC00477-IBu 0.99 1.22e-12 6.76e-09
Smp_056560.1 SmLINC00484-IBu 0.94 8.39e-08 9.10e-06
Smp_056560.1 SmLINC00548-IBu 0.90 3.77e-06 1.00e-04
Smp_056560.1 SmLINC00633-IBu 0.88 1.32e-05 3.00e-04
Smp_056560.1 SmLINC00769-IBu 0.89 5.04e-06 1.00e-04
Smp_056560.1 SmLINC01066-IBu 0.97 4.23e-10 2.70e-07
Smp_056560.1 SmLINC01122-IBu 0.81 2.00e-04 2.60e-03
Smp_056560.1 SmLINC01139-IBu 0.93 2.62e-07 2.00e-05
Smp_056560.1 SmLINC01171-IBu 0.80 2.00e-04 2.80e-03
Smp_056560.1 SmLINC01231-IBu 0.85 4.57e-05 8.00e-04
Smp_056560.1 SmLINC01433-IBu 0.97 3.66e-10 2.46e-07
Smp_056560.1 SmLINC01435-IBu 0.93 2.62e-07 2.00e-05
Smp_056560.1 SmLINC01538-IBu 0.91 1.90e-06 8.11e-05
Smp_056560.1 SmLINC01569-IBu 0.83 9.86e-05 1.40e-03
Smp_056560.1 SmLINC01733-IBu 0.84 7.42e-05 1.10e-03
Smp_056560.1 SmLINC01746-IBu 0.92 6.37e-07 3.73e-05
Smp_056560.1 SmLINC01822-IBu 0.98 1.52e-10 1.39e-07
Smp_056560.1 SmLINC02084-IBu 0.82 1.00e-04 2.10e-03
Smp_056560.1 SmLINC02546-IBu 0.81 1.00e-04 2.20e-03
Smp_056560.1 SmLINC02581-IBu 0.86 3.52e-05 6.00e-04
Smp_056560.1 SmLINC03108-IBu 0.82 1.00e-04 1.70e-03
Smp_056560.1 SmLINC03309-IBu 0.95 6.05e-08 7.26e-06
Smp_056560.1 SmLINC03542-IBu 0.96 2.49e-09 8.53e-07
Smp_056560.1 SmLINC03693-IBu 0.96 8.02e-09 1.84e-06
Smp_056560.1 SmLINC04054-IBu 0.97 4.10e-10 2.65e-07
Smp_056560.1 SmLINC04345-IBu 0.94 1.04e-07 1.05e-05
Smp_056560.1 SmLINC04432-IBu 0.87 1.69e-05 3.00e-04
Smp_056560.1 SmLINC04475-IBu 0.93 2.26e-07 1.80e-05
Smp_056560.1 SmLINC04521-IBu 0.83 9.30e-05 1.30e-03
Smp_056560.1 SmLINC04637-IBu 0.83 9.63e-05 1.30e-03
Smp_056560.1 SmLINC04663-IBu 0.95 5.81e-08 7.07e-06
Smp_056560.1 SmLINC04684-IBu 0.89 7.87e-06 2.00e-04
Smp_056560.1 SmLINC04747-IBu 0.93 2.70e-07 2.04e-05
Smp_056560.1 SmLINC04759-IBu 0.82 1.00e-04 1.70e-03
Smp_056560.1 SmLINC04769-IBu 0.97 2.29e-09 8.08e-07
Smp_056560.1 SmLINC05009-IBu 0.97 8.55e-10 4.26e-07
Smp_056560.1 SmLINC05147-IBu 0.89 4.87e-06 1.00e-04
Smp_056560.1 SmLINC05171-IBu 0.99 1.48e-12 7.63e-09
Smp_056560.1 SmLINC05258-IBu 0.93 3.23e-07 2.32e-05
Smp_056560.1 SmLINC05870-IBu 0.80 2.00e-04 3.00e-03
Smp_056560.1 SmLINC06007-IBu 0.97 9.05e-10 4.42e-07
Smp_056560.1 SmLINC06010-IBu 0.89 7.14e-06 2.00e-04
Smp_056560.1 SmLINC06221-IBu 0.97 2.46e-10 1.90e-07
Smp_056560.1 SmLINC06418-IBu 0.93 4.32e-07 2.84e-05
Smp_056560.1 SmLINC06444-IBu 0.91 1.76e-06 7.67e-05
Smp_056560.1 SmLINC06449-IBu 0.91 1.58e-06 7.11e-05
Smp_056560.1 SmLINC06536-IBu 0.96 4.66e-09 1.28e-06
Smp_056560.1 SmLINC06537-IBu 0.81 1.00e-04 2.30e-03
Smp_056560.1 SmLINC06538-IBu 0.92 1.04e-06 5.31e-05
Smp_056560.1 SmLINC06543-IBu 0.96 4.58e-09 1.27e-06

Correlation between Smp_056560.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_056560.1 0 3.59 5.75 9.31 7.81
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 Smp_056560.1 0.94 8.20e-08 9.45e-06
Smp_014780.1 Smp_056560.1 0.93 3.30e-07 2.46e-05
Smp_017610.1 Smp_056560.1 0.96 3.32e-09 1.10e-06
Smp_045200.1 Smp_056560.1 0.97 4.81e-10 3.18e-07
Smp_058660.1 Smp_056560.1 0.92 7.63e-07 4.41e-05
Smp_068270.1 Smp_056560.1 0.95 1.90e-08 3.51e-06
Smp_081920.1 Smp_056560.1 0.91 1.38e-06 6.70e-05
Smp_056560.1 Smp_082580.1 0.97 1.31e-09 6.08e-07
Smp_056560.1 Smp_084270.1 0.99 3.54e-13 3.48e-09
Smp_105730.1 Smp_056560.1 0.97 9.84e-10 5.04e-07
Smp_118560.1 Smp_056560.1 0.98 1.31e-11 3.26e-08
Smp_123200.1 Smp_056560.1 0.97 7.07e-10 4.08e-07
Smp_056560.1 Smp_125200.1 0.93 2.05e-07 1.77e-05
Smp_056560.1 Smp_125210.1 0.98 1.30e-11 3.25e-08
Smp_128510.1 Smp_056560.1 0.97 1.79e-09 7.39e-07
Smp_131840.1 Smp_056560.1 0.95 2.35e-08 4.05e-06
Smp_056560.1 Smp_134960.1 0.99 1.05e-12 6.81e-09
Smp_137320.1 Smp_056560.1 0.94 8.28e-08 9.51e-06
Smp_141680.1 Smp_056560.1 0.96 1.02e-08 2.31e-06
Smp_150980.2 Smp_056560.1 0.90 3.55e-06 1.00e-04
Smp_151120.1 Smp_056560.1 0.90 2.64e-06 1.00e-04
Smp_154180.1 Smp_056560.1 0.94 8.33e-08 9.55e-06
Smp_154190.1 Smp_056560.1 0.93 3.90e-07 2.76e-05
Smp_160360.1 Smp_056560.1 0.96 1.17e-08 2.53e-06
Smp_163940.1 Smp_056560.1 0.98 3.61e-11 6.15e-08
Smp_056560.1 Smp_164550.1 0.95 2.12e-08 3.78e-06
Smp_170280.1 Smp_056560.1 0.98 1.13e-10 1.25e-07
Smp_172480.1 Smp_056560.1 0.90 2.56e-06 1.00e-04
Smp_172520.1 Smp_056560.1 0.95 4.82e-08 6.59e-06
Smp_056560.1 Smp_175020.1 0.98 2.32e-12 1.11e-08
Smp_194960.1 Smp_056560.1 0.98 1.55e-10 1.54e-07
Smp_056560.1 Smp_194970.1 0.98 5.14e-11 7.66e-08
Smp_194980.1 Smp_056560.1 0.98 6.53e-11 8.91e-08
Smp_197400.1 Smp_056560.1 0.96 4.34e-09 1.31e-06
Smp_200750.1 Smp_056560.1 0.99 1.40e-14 4.87e-10
Smp_056560.1 Smp_205270.1 0.92 6.72e-07 4.03e-05