Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_056460.6 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_056460.6 0 -3.91 -3.91 6.00 4.76

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_056460.6 SmLINC00171-IBu 0.97 2.20e-09 7.87e-07
Smp_056460.6 SmLINC00477-IBu 0.91 1.89e-06 8.08e-05
Smp_056460.6 SmLINC00548-IBu 0.80 2.00e-04 2.80e-03
Smp_056460.6 SmLINC01066-IBu 0.96 5.69e-09 1.46e-06
Smp_056460.6 SmLINC01139-IBu 0.81 2.00e-04 2.40e-03
Smp_056460.6 SmLINC01231-IBu 0.80 3.00e-04 3.40e-03
Smp_056460.6 SmLINC01433-IBu 0.96 1.37e-08 2.64e-06
Smp_056460.6 SmLINC01435-IBu 0.84 8.85e-05 1.20e-03
Smp_056460.6 SmLINC01746-IBu 0.84 8.04e-05 1.20e-03
Smp_056460.6 SmLINC01822-IBu 0.95 2.65e-08 4.13e-06
Smp_056460.6 SmLINC02084-IBu 0.81 2.00e-04 2.50e-03
Smp_056460.6 SmLINC03108-IBu 0.89 5.76e-06 1.00e-04
Smp_056460.6 SmLINC03309-IBu 0.84 8.34e-05 1.20e-03
Smp_056460.6 SmLINC03542-IBu 0.87 1.55e-05 3.00e-04
Smp_056460.6 SmLINC03693-IBu 0.89 8.14e-06 2.00e-04
Smp_056460.6 SmLINC04054-IBu 0.86 2.61e-05 5.00e-04
Smp_056460.6 SmLINC04475-IBu 0.83 1.00e-04 1.50e-03
Smp_056460.6 SmLINC04663-IBu 0.81 1.00e-04 2.30e-03
Smp_056460.6 SmLINC04684-IBu 0.88 1.46e-05 3.00e-04
Smp_056460.6 SmLINC04769-IBu 0.87 2.41e-05 5.00e-04
Smp_056460.6 SmLINC05009-IBu 0.92 1.16e-06 5.73e-05
Smp_056460.6 SmLINC05147-IBu 0.84 8.28e-05 1.20e-03
Smp_056460.6 SmLINC05171-IBu 0.92 9.05e-07 4.78e-05
Smp_056460.6 SmLINC05258-IBu 0.91 1.47e-06 6.75e-05
Smp_056460.6 SmLINC06007-IBu 0.97 1.24e-09 5.45e-07
Smp_056460.6 SmLINC06221-IBu 0.90 3.77e-06 1.00e-04
Smp_056460.6 SmLINC06418-IBu 0.90 4.52e-06 1.00e-04
Smp_056460.6 SmLINC06536-IBu 0.92 8.20e-07 4.45e-05
Smp_056460.6 SmLINC06538-IBu 0.90 3.03e-06 1.00e-04
Smp_056460.6 SmLINC06543-IBu 0.90 3.13e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056460.6 0 -3.91 -3.91 6.00 4.76
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_200750.1 0 1.72 7.25 10.11 8.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_056460.6 Smp_084270.1 0.91 1.80e-06 8.08e-05
Smp_056460.6 Smp_123200.1 0.92 6.80e-07 4.07e-05
Smp_056460.6 Smp_125210.1 0.90 3.59e-06 1.00e-04
Smp_056460.6 Smp_134960.1 0.91 2.25e-06 9.45e-05
Smp_137320.1 Smp_056460.6 0.92 1.04e-06 5.49e-05
Smp_163940.1 Smp_056460.6 0.91 1.48e-06 7.05e-05
Smp_170280.1 Smp_056460.6 0.90 2.63e-06 1.00e-04
Smp_056460.6 Smp_200750.1 0.93 2.22e-07 1.87e-05