Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_056350.1 Data

Correlation between Smp_056350.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_056350.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_056350.1 0 0.33 1.23 3.20 6.26

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_056350.1 SmLINC00001-IBu 0.86 2.53e-05 5.00e-04
Smp_056350.1 SmLINC00004-IBu 0.87 2.13e-05 4.00e-04
Smp_056350.1 SmLINC00007-IBu 0.84 7.81e-05 1.10e-03
Smp_056350.1 SmLINC01520-IBu 0.92 6.57e-07 3.81e-05
Smp_056350.1 SmLINC02029-IBu 0.95 4.33e-08 5.78e-06
Smp_056350.1 SmLINC02376-IBu 0.89 8.67e-06 2.00e-04
Smp_056350.1 SmLINC02539-IBu 0.89 7.10e-06 2.00e-04
Smp_056350.1 SmLINC02540-IBu 0.82 1.00e-04 1.90e-03
Smp_056350.1 SmLINC02577-IBu 0.91 1.34e-06 6.34e-05
Smp_056350.1 SmLINC02783-IBu 0.92 6.88e-07 3.94e-05
Smp_056350.1 SmLINC02786-IBu 0.95 3.50e-08 5.00e-06
Smp_056350.1 SmLINC03326-IBu 0.83 9.73e-05 1.30e-03
Smp_056350.1 SmLINC03658-IBu 0.92 7.32e-07 4.11e-05
Smp_056350.1 SmLINC04235-IBu 0.97 1.66e-09 6.57e-07
Smp_056350.1 SmLINC04237-IBu 0.85 4.88e-05 8.00e-04
Smp_056350.1 SmLINC04627-IBu 0.89 6.00e-06 1.00e-04
Smp_056350.1 SmLINC04896-IBu 0.93 3.94e-07 2.66e-05
Smp_056350.1 SmLINC05404-IBu 0.97 1.52e-09 6.19e-07
Smp_056350.1 SmLINC05604-IBu 0.87 1.59e-05 3.00e-04
Smp_056350.1 SmLINC05684-IBu 0.96 1.22e-08 2.44e-06
Smp_056350.1 SmLINC06239-IBu 0.95 3.06e-08 4.56e-06

Correlation between Smp_056350.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_056350.1 0 0.33 1.23 3.20 6.26
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_056350.1 0.90 4.31e-06 1.00e-04
Smp_004420.3 Smp_056350.1 0.92 5.25e-07 3.40e-05
Smp_056350.1 Smp_016490.2 0.93 2.66e-07 2.12e-05
Smp_056350.1 Smp_028870.1 0.91 1.88e-06 8.35e-05
Smp_056350.1 Smp_037720.1 0.92 5.80e-07 3.64e-05
Smp_041540.1 Smp_056350.1 0.97 5.00e-10 3.26e-07
Smp_056350.1 Smp_070540.1 0.95 3.34e-08 5.13e-06
Smp_056350.1 Smp_085180.1 0.90 3.25e-06 1.00e-04
Smp_056350.1 Smp_086450.3 0.91 1.45e-06 6.96e-05
Smp_089270.1 Smp_056350.1 0.91 1.99e-06 8.67e-05
Smp_056350.1 Smp_102780.1 0.92 7.15e-07 4.21e-05
Smp_056350.1 Smp_105450.1 0.95 3.12e-08 4.91e-06
Smp_056350.1 Smp_105450.2 0.97 1.18e-09 5.68e-07
Smp_126340.1 Smp_056350.1 0.93 2.66e-07 2.12e-05
Smp_056350.1 Smp_130100.1 0.95 1.72e-08 3.28e-06
Smp_056350.1 Smp_130970.1 0.93 3.01e-07 2.31e-05
Smp_056350.1 Smp_131410.1 0.90 2.83e-06 1.00e-04
Smp_056350.1 Smp_136730.1 0.94 8.83e-08 9.93e-06
Smp_137460.1 Smp_056350.1 0.98 5.74e-11 8.21e-08
Smp_056350.1 Smp_137700.1 0.94 9.82e-08 1.06e-05
Smp_056350.1 Smp_137720.1 0.90 3.71e-06 1.00e-04
Smp_056350.1 Smp_138360.1 0.96 5.32e-09 1.50e-06
Smp_139160.1 Smp_056350.1 0.96 1.06e-08 2.37e-06
Smp_056350.1 Smp_139240.1 0.92 6.43e-07 3.91e-05
Smp_056350.1 Smp_140720.1 0.93 1.94e-07 1.70e-05
Smp_152150.1 Smp_056350.1 0.98 7.45e-11 9.69e-08
Smp_056350.1 Smp_159650.1 0.92 8.04e-07 4.58e-05
Smp_162320.1 Smp_056350.1 0.93 2.90e-07 2.25e-05
Smp_056350.1 Smp_164320.1 0.91 2.14e-06 9.13e-05
Smp_164400.1 Smp_056350.1 0.98 1.35e-11 3.33e-08
Smp_056350.1 Smp_167830.1 0.90 2.91e-06 1.00e-04
Smp_056350.1 Smp_170840.1 0.93 4.38e-07 2.99e-05
Smp_181070.1 Smp_056350.1 0.97 1.54e-09 6.72e-07
Smp_056350.1 Smp_187140.1 0.93 3.27e-07 2.45e-05
Smp_056350.1 Smp_194910.1 0.95 4.94e-08 6.70e-06
Smp_056350.1 Smp_203030.1 0.94 1.06e-07 1.12e-05
Smp_056350.1 Smp_205580.1 0.92 6.99e-07 4.15e-05