Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_055770.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_055770.1 SmLINC02678-IBu 0.82 1.00e-04 1.90e-03
Smp_055770.1 SmLINC04957-IBu 0.90 3.88e-06 1.00e-04
Smp_055770.1 SmLINC05989-IBu 0.84 8.87e-05 1.20e-03
Smp_055770.1 SmLINC06128-IBu 0.84 6.26e-05 1.00e-03
Smp_055770.1 SmLINC06890-IBu 0.91 2.28e-06 9.23e-05
Smp_055770.1 SmLINC06903-IBu 0.88 1.42e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
Smp_002510.1 0 -3.00 -2.99 -4.71 -4.29
Smp_005880.1 0 -1.71 -5.17 -4.43 -5.19
Smp_009650.1 0 -2.22 -4.12 -4.36 -3.86
Smp_016730.1 0 -3.42 -4.55 -5.13 -5.31
Smp_019750.2 0 -2.70 -5.17 -4.10 -4.19
Smp_020550.1 0 -3.71 -4.02 -4.24 -5.10
Smp_021730.1 0 -2.52 -3.78 -4.00 -3.90
Smp_030500.1 0 -2.77 -6.42 -6.74 -6.44
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_033400.1 0 -2.69 -7.71 -5.07 -4.27
Smp_034550.1 0 -2.91 -5.29 -2.60 -4.93
Smp_035270.2 0 -2.51 -3.90 -3.56 -3.15
Smp_036250.1 0 -3.24 -3.82 -4.15 -3.72
Smp_038100.1 0 -2.11 -3.55 -4.08 -3.42
Smp_038530.1 0 -2.20 -4.62 -4.98 -6.68
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_057060.1 0 -3.71 -5.93 -6.06 -6.08
Smp_057790.1 0 -3.82 -7.29 -4.86 -7.43
Smp_061940.2 0 -3.16 -5.22 -11.34 -15.89
Smp_063090.1 0 -2.16 -4.16 -3.57 -3.93
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_071390.1 0 -3.12 -4.67 -2.84 -3.82
Smp_076010.1 0 -2.03 -5.17 -3.81 -3.82
Smp_079220.1 0 -2.48 -4.55 -6.52 -5.99
Smp_079920.1 0 -2.43 -3.90 -3.20 -3.57
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_083720.1 0 -2.37 -5.50 -6.31 -5.77
Smp_087250.1 0 -2.06 -5.90 -3.94 -5.02
Smp_092320.1 0 -1.82 -3.08 -5.42 -5.28
Smp_097490.1 0 -3.10 -5.15 -2.72 -1.99
Smp_099670.1 0 -3.51 -4.19 -5.26 -6.78
Smp_099680.1 0 -3.17 -4.14 -4.93 -7.18
Smp_112480.1 0 -3.87 -4.82 -3.33 -2.83
Smp_114910.1 0 -3.08 -7.52 -7.91 -7.70
Smp_124340.1 0 -2.62 -4.99 -7.42 -3.75
Smp_129610.1 0 -3.45 -4.74 -3.50 -3.64
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_137520.1 0 -2.84 -5.66 -3.12 -4.79
Smp_140270.1 0 -2.83 -3.04 -4.31 -3.33
Smp_152260.1 0 -3.17 -4.39 -4.03 -4.71
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_153600.1 0 -2.66 -5.24 -5.88 -4.89
Smp_154370.1 0 -2.82 -7.17 -3.52 -2.90
Smp_155890.1 0 -3.01 -4.45 -2.70 -3.71
Smp_163390.1 0 -8.96 -8.96 -8.96 -8.96
Smp_175190.1 0 -3.40 -5.32 -6.00 -5.17
Smp_194770.1 0 -2.35 -7.85 -7.77 -7.92
Smp_196050.1 0 -3.12 -5.35 -6.02 -6.99
Smp_204770.1 0 -2.64 -6.46 -5.44 -5.13
Smp_214150.1 0 -3.99 -7.32 -3.18 -5.90

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_055770.1 SmLINC04957-IBu 0.90 3.88e-06 1.00e-04
Smp_055770.1 SmLINC06890-IBu 0.91 2.28e-06 9.55e-05
Smp_055770.1 Smp_002510.1 0.97 1.06e-09 5.28e-07
Smp_055770.1 Smp_005880.1 0.91 1.75e-06 7.92e-05
Smp_055770.1 Smp_009650.1 0.95 3.38e-08 5.18e-06
Smp_055770.1 Smp_016730.1 0.97 1.41e-09 6.37e-07
Smp_055770.1 Smp_019750.2 0.91 2.00e-06 8.72e-05
Smp_055770.1 Smp_020550.1 0.95 5.37e-08 7.09e-06
Smp_055770.1 Smp_021730.1 0.91 1.39e-06 6.73e-05
Smp_030500.1 Smp_055770.1 0.96 8.10e-09 1.98e-06
Smp_032980.1 Smp_055770.1 0.93 3.00e-07 2.30e-05
Smp_033400.1 Smp_055770.1 0.90 2.96e-06 1.00e-04
Smp_055770.1 Smp_034550.1 0.93 3.65e-07 2.64e-05
Smp_055770.1 Smp_035270.2 0.90 3.30e-06 1.00e-04
Smp_055770.1 Smp_036250.1 0.97 1.59e-09 6.86e-07
Smp_055770.1 Smp_038100.1 0.95 1.88e-08 3.48e-06
Smp_055770.1 Smp_038530.1 0.93 2.24e-07 1.88e-05
Smp_055770.1 Smp_052060.1 0.90 4.26e-06 1.00e-04
Smp_055770.1 Smp_057060.1 0.90 3.66e-06 1.00e-04
Smp_055770.1 Smp_057790.1 0.93 2.30e-07 1.92e-05
Smp_055770.1 Smp_061940.2 0.91 1.41e-06 6.82e-05
Smp_063090.1 Smp_055770.1 0.95 3.03e-08 4.81e-06
Smp_055770.1 Smp_071380.2 0.94 8.83e-08 9.94e-06
Smp_055770.1 Smp_071390.1 0.97 1.06e-09 5.31e-07
Smp_055770.1 Smp_076010.1 0.93 4.26e-07 2.94e-05
Smp_055770.1 Smp_079220.1 0.95 4.07e-08 5.88e-06
Smp_055770.1 Smp_079920.1 0.97 6.32e-10 3.79e-07
Smp_055770.1 Smp_079970.1 0.99 8.62e-13 6.05e-09
Smp_055770.1 Smp_083720.1 0.95 4.80e-08 6.57e-06
Smp_055770.1 Smp_087250.1 0.91 1.63e-06 7.54e-05
Smp_092320.1 Smp_055770.1 0.91 1.62e-06 7.49e-05
Smp_097490.1 Smp_055770.1 0.92 8.89e-07 4.91e-05
Smp_055770.1 Smp_099670.1 0.97 1.88e-09 7.64e-07
Smp_055770.1 Smp_099680.1 0.96 1.36e-08 2.81e-06
Smp_055770.1 Smp_112480.1 0.95 4.09e-08 5.89e-06
Smp_055770.1 Smp_114910.1 0.92 6.76e-07 4.05e-05
Smp_055770.1 Smp_124340.1 0.93 4.11e-07 2.86e-05
Smp_129610.1 Smp_055770.1 0.97 2.70e-10 2.20e-07
Smp_055770.1 Smp_134410.1 0.91 2.41e-06 9.93e-05
Smp_055770.1 Smp_137520.1 0.93 2.40e-07 1.98e-05
Smp_055770.1 Smp_140270.1 0.92 8.60e-07 4.80e-05
Smp_152260.1 Smp_055770.1 0.94 6.35e-08 7.94e-06
Smp_055770.1 Smp_152780.1 0.99 6.95e-13 5.28e-09
Smp_055770.1 Smp_153600.1 0.97 4.08e-10 2.87e-07
Smp_154370.1 Smp_055770.1 0.92 1.08e-06 5.65e-05
Smp_055770.1 Smp_155890.1 0.94 8.80e-08 9.91e-06
Smp_055770.1 Smp_163390.1 0.92 5.95e-07 3.71e-05
Smp_175190.1 Smp_055770.1 0.90 3.68e-06 1.00e-04
Smp_055770.1 Smp_194770.1 0.95 1.68e-08 3.23e-06
Smp_055770.1 Smp_196050.1 0.97 7.66e-10 4.29e-07
Smp_055770.1 Smp_204770.1 0.97 1.16e-09 5.63e-07
Smp_055770.1 Smp_214150.1 0.92 8.88e-07 4.91e-05