Schistosoma mansoni lncRNAs Database
This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, VinÃcius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.
Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.
Smp_055770.1 Data
Expression Fold Change Data [log2(FC)] - Download data
Pearson Correlation Coefficient Data - Download data
Expression Fold Change Data [log2(FC)] - Download data
| Gene ID | Cerc | 3S | 24S | Male | Female |
|---|---|---|---|---|---|
| SmLINC02678-IBu | 0 | -3.18 | -2.40 | -3.22 | -5.56 |
| SmLINC04957-IBu | 0 | -2.62 | -5.90 | -3.92 | -7.44 |
| SmLINC05989-IBu | 0 | -1.59 | -3.64 | -6.05 | -6.59 |
| SmLINC06128-IBu | 0 | -1.91 | -4.82 | -10.42 | -10.44 |
| SmLINC06890-IBu | 0 | -2.18 | -6.70 | -7.95 | -9.08 |
| SmLINC06903-IBu | 0 | -1.36 | -4.25 | -5.91 | -3.41 |
| Smp_055770.1 | 0 | -5.16 | -5.96 | -12.28 | -12.28 |
Pearson Correlation Coefficient Data - Download data
| Compared Gene | Gene | Pearson Correlation Value | p-value | B.-H. adjusted p-value |
|---|---|---|---|---|
| Smp_055770.1 | SmLINC02678-IBu | 0.82 | 1.00e-04 | 1.90e-03 |
| Smp_055770.1 | SmLINC04957-IBu | 0.90 | 3.88e-06 | 1.00e-04 |
| Smp_055770.1 | SmLINC05989-IBu | 0.84 | 8.87e-05 | 1.20e-03 |
| Smp_055770.1 | SmLINC06128-IBu | 0.84 | 6.26e-05 | 1.00e-03 |
| Smp_055770.1 | SmLINC06890-IBu | 0.91 | 2.28e-06 | 9.23e-05 |
| Smp_055770.1 | SmLINC06903-IBu | 0.88 | 1.42e-05 | 3.00e-04 |
Expression Fold Change Data [log2(FC)] - Download data
| Gene ID | Cerc | 3S | 24S | Male | Female |
|---|---|---|---|---|---|
| SmLINC04957-IBu | 0 | -2.62 | -5.90 | -3.92 | -7.44 |
| SmLINC06890-IBu | 0 | -2.18 | -6.70 | -7.95 | -9.08 |
| Smp_002510.1 | 0 | -3.00 | -2.99 | -4.71 | -4.29 |
| Smp_005880.1 | 0 | -1.71 | -5.17 | -4.43 | -5.19 |
| Smp_009650.1 | 0 | -2.22 | -4.12 | -4.36 | -3.86 |
| Smp_016730.1 | 0 | -3.42 | -4.55 | -5.13 | -5.31 |
| Smp_019750.2 | 0 | -2.70 | -5.17 | -4.10 | -4.19 |
| Smp_020550.1 | 0 | -3.71 | -4.02 | -4.24 | -5.10 |
| Smp_021730.1 | 0 | -2.52 | -3.78 | -4.00 | -3.90 |
| Smp_030500.1 | 0 | -2.77 | -6.42 | -6.74 | -6.44 |
| Smp_032980.1 | 0 | -3.49 | -10.60 | -12.19 | -12.01 |
| Smp_033400.1 | 0 | -2.69 | -7.71 | -5.07 | -4.27 |
| Smp_034550.1 | 0 | -2.91 | -5.29 | -2.60 | -4.93 |
| Smp_035270.2 | 0 | -2.51 | -3.90 | -3.56 | -3.15 |
| Smp_036250.1 | 0 | -3.24 | -3.82 | -4.15 | -3.72 |
| Smp_038100.1 | 0 | -2.11 | -3.55 | -4.08 | -3.42 |
| Smp_038530.1 | 0 | -2.20 | -4.62 | -4.98 | -6.68 |
| Smp_052060.1 | 0 | -2.31 | -3.14 | -4.09 | -3.50 |
| Smp_055770.1 | 0 | -5.16 | -5.96 | -12.28 | -12.28 |
| Smp_057060.1 | 0 | -3.71 | -5.93 | -6.06 | -6.08 |
| Smp_057790.1 | 0 | -3.82 | -7.29 | -4.86 | -7.43 |
| Smp_061940.2 | 0 | -3.16 | -5.22 | -11.34 | -15.89 |
| Smp_063090.1 | 0 | -2.16 | -4.16 | -3.57 | -3.93 |
| Smp_071380.2 | 0 | -3.62 | -7.62 | -10.38 | -10.26 |
| Smp_071390.1 | 0 | -3.12 | -4.67 | -2.84 | -3.82 |
| Smp_076010.1 | 0 | -2.03 | -5.17 | -3.81 | -3.82 |
| Smp_079220.1 | 0 | -2.48 | -4.55 | -6.52 | -5.99 |
| Smp_079920.1 | 0 | -2.43 | -3.90 | -3.20 | -3.57 |
| Smp_079970.1 | 0 | -3.36 | -6.77 | -9.16 | -12.28 |
| Smp_083720.1 | 0 | -2.37 | -5.50 | -6.31 | -5.77 |
| Smp_087250.1 | 0 | -2.06 | -5.90 | -3.94 | -5.02 |
| Smp_092320.1 | 0 | -1.82 | -3.08 | -5.42 | -5.28 |
| Smp_097490.1 | 0 | -3.10 | -5.15 | -2.72 | -1.99 |
| Smp_099670.1 | 0 | -3.51 | -4.19 | -5.26 | -6.78 |
| Smp_099680.1 | 0 | -3.17 | -4.14 | -4.93 | -7.18 |
| Smp_112480.1 | 0 | -3.87 | -4.82 | -3.33 | -2.83 |
| Smp_114910.1 | 0 | -3.08 | -7.52 | -7.91 | -7.70 |
| Smp_124340.1 | 0 | -2.62 | -4.99 | -7.42 | -3.75 |
| Smp_129610.1 | 0 | -3.45 | -4.74 | -3.50 | -3.64 |
| Smp_134410.1 | 0 | -2.22 | -3.88 | -6.81 | -12.78 |
| Smp_137520.1 | 0 | -2.84 | -5.66 | -3.12 | -4.79 |
| Smp_140270.1 | 0 | -2.83 | -3.04 | -4.31 | -3.33 |
| Smp_152260.1 | 0 | -3.17 | -4.39 | -4.03 | -4.71 |
| Smp_152780.1 | 0 | -4.06 | -8.92 | -8.72 | -11.55 |
| Smp_153600.1 | 0 | -2.66 | -5.24 | -5.88 | -4.89 |
| Smp_154370.1 | 0 | -2.82 | -7.17 | -3.52 | -2.90 |
| Smp_155890.1 | 0 | -3.01 | -4.45 | -2.70 | -3.71 |
| Smp_163390.1 | 0 | -8.96 | -8.96 | -8.96 | -8.96 |
| Smp_175190.1 | 0 | -3.40 | -5.32 | -6.00 | -5.17 |
| Smp_194770.1 | 0 | -2.35 | -7.85 | -7.77 | -7.92 |
| Smp_196050.1 | 0 | -3.12 | -5.35 | -6.02 | -6.99 |
| Smp_204770.1 | 0 | -2.64 | -6.46 | -5.44 | -5.13 |
| Smp_214150.1 | 0 | -3.99 | -7.32 | -3.18 | -5.90 |
Pearson Correlation Coefficient Data - Download data
| Compared Gene | Gene | Pearson Correlation Value | p-value | B.-H. adjusted p-value |
|---|---|---|---|---|
| Smp_055770.1 | SmLINC04957-IBu | 0.90 | 3.88e-06 | 1.00e-04 |
| Smp_055770.1 | SmLINC06890-IBu | 0.91 | 2.28e-06 | 9.55e-05 |
| Smp_055770.1 | Smp_002510.1 | 0.97 | 1.06e-09 | 5.28e-07 |
| Smp_055770.1 | Smp_005880.1 | 0.91 | 1.75e-06 | 7.92e-05 |
| Smp_055770.1 | Smp_009650.1 | 0.95 | 3.38e-08 | 5.18e-06 |
| Smp_055770.1 | Smp_016730.1 | 0.97 | 1.41e-09 | 6.37e-07 |
| Smp_055770.1 | Smp_019750.2 | 0.91 | 2.00e-06 | 8.72e-05 |
| Smp_055770.1 | Smp_020550.1 | 0.95 | 5.37e-08 | 7.09e-06 |
| Smp_055770.1 | Smp_021730.1 | 0.91 | 1.39e-06 | 6.73e-05 |
| Smp_030500.1 | Smp_055770.1 | 0.96 | 8.10e-09 | 1.98e-06 |
| Smp_032980.1 | Smp_055770.1 | 0.93 | 3.00e-07 | 2.30e-05 |
| Smp_033400.1 | Smp_055770.1 | 0.90 | 2.96e-06 | 1.00e-04 |
| Smp_055770.1 | Smp_034550.1 | 0.93 | 3.65e-07 | 2.64e-05 |
| Smp_055770.1 | Smp_035270.2 | 0.90 | 3.30e-06 | 1.00e-04 |
| Smp_055770.1 | Smp_036250.1 | 0.97 | 1.59e-09 | 6.86e-07 |
| Smp_055770.1 | Smp_038100.1 | 0.95 | 1.88e-08 | 3.48e-06 |
| Smp_055770.1 | Smp_038530.1 | 0.93 | 2.24e-07 | 1.88e-05 |
| Smp_055770.1 | Smp_052060.1 | 0.90 | 4.26e-06 | 1.00e-04 |
| Smp_055770.1 | Smp_057060.1 | 0.90 | 3.66e-06 | 1.00e-04 |
| Smp_055770.1 | Smp_057790.1 | 0.93 | 2.30e-07 | 1.92e-05 |
| Smp_055770.1 | Smp_061940.2 | 0.91 | 1.41e-06 | 6.82e-05 |
| Smp_063090.1 | Smp_055770.1 | 0.95 | 3.03e-08 | 4.81e-06 |
| Smp_055770.1 | Smp_071380.2 | 0.94 | 8.83e-08 | 9.94e-06 |
| Smp_055770.1 | Smp_071390.1 | 0.97 | 1.06e-09 | 5.31e-07 |
| Smp_055770.1 | Smp_076010.1 | 0.93 | 4.26e-07 | 2.94e-05 |
| Smp_055770.1 | Smp_079220.1 | 0.95 | 4.07e-08 | 5.88e-06 |
| Smp_055770.1 | Smp_079920.1 | 0.97 | 6.32e-10 | 3.79e-07 |
| Smp_055770.1 | Smp_079970.1 | 0.99 | 8.62e-13 | 6.05e-09 |
| Smp_055770.1 | Smp_083720.1 | 0.95 | 4.80e-08 | 6.57e-06 |
| Smp_055770.1 | Smp_087250.1 | 0.91 | 1.63e-06 | 7.54e-05 |
| Smp_092320.1 | Smp_055770.1 | 0.91 | 1.62e-06 | 7.49e-05 |
| Smp_097490.1 | Smp_055770.1 | 0.92 | 8.89e-07 | 4.91e-05 |
| Smp_055770.1 | Smp_099670.1 | 0.97 | 1.88e-09 | 7.64e-07 |
| Smp_055770.1 | Smp_099680.1 | 0.96 | 1.36e-08 | 2.81e-06 |
| Smp_055770.1 | Smp_112480.1 | 0.95 | 4.09e-08 | 5.89e-06 |
| Smp_055770.1 | Smp_114910.1 | 0.92 | 6.76e-07 | 4.05e-05 |
| Smp_055770.1 | Smp_124340.1 | 0.93 | 4.11e-07 | 2.86e-05 |
| Smp_129610.1 | Smp_055770.1 | 0.97 | 2.70e-10 | 2.20e-07 |
| Smp_055770.1 | Smp_134410.1 | 0.91 | 2.41e-06 | 9.93e-05 |
| Smp_055770.1 | Smp_137520.1 | 0.93 | 2.40e-07 | 1.98e-05 |
| Smp_055770.1 | Smp_140270.1 | 0.92 | 8.60e-07 | 4.80e-05 |
| Smp_152260.1 | Smp_055770.1 | 0.94 | 6.35e-08 | 7.94e-06 |
| Smp_055770.1 | Smp_152780.1 | 0.99 | 6.95e-13 | 5.28e-09 |
| Smp_055770.1 | Smp_153600.1 | 0.97 | 4.08e-10 | 2.87e-07 |
| Smp_154370.1 | Smp_055770.1 | 0.92 | 1.08e-06 | 5.65e-05 |
| Smp_055770.1 | Smp_155890.1 | 0.94 | 8.80e-08 | 9.91e-06 |
| Smp_055770.1 | Smp_163390.1 | 0.92 | 5.95e-07 | 3.71e-05 |
| Smp_175190.1 | Smp_055770.1 | 0.90 | 3.68e-06 | 1.00e-04 |
| Smp_055770.1 | Smp_194770.1 | 0.95 | 1.68e-08 | 3.23e-06 |
| Smp_055770.1 | Smp_196050.1 | 0.97 | 7.66e-10 | 4.29e-07 |
| Smp_055770.1 | Smp_204770.1 | 0.97 | 1.16e-09 | 5.63e-07 |
| Smp_055770.1 | Smp_214150.1 | 0.92 | 8.88e-07 | 4.91e-05 |