Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_055640.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
Smp_055640.1 0 1.44 3.41 4.52 4.57

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_055640.1 SmLINC03693-IBu 0.52 4.65e-02 1.06e-01
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
Smp_055640.1 0 1.44 3.41 4.52 4.57

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_055640.1 SmLINC05632-IBu 0.92 5.49e-07 3.36e-05
Smp_055640.1 SmLINC05990-IBu 0.80 2.00e-04 3.00e-03
Smp_055640.1 SmLINC06128-IBu -0.80 2.00e-04 3.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_040720.3 0 8.84 10.93 11.66 10.78
Smp_055640.1 0 1.44 3.41 4.52 4.57
Smp_124820.2 0 10.53 13.23 12.64 12.90
Smp_176430.2 0 9.09 10.43 10.57 10.62

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_055640.1 Smp_040720.3 0.93 2.77e-07 2.18e-05
Smp_055640.1 Smp_124820.2 0.94 6.55e-08 8.11e-06
Smp_055640.1 Smp_176430.2 0.93 3.62e-07 2.63e-05