Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_055220.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_055220.2 0 -2.15 -2.21 -13.10 -13.10

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_055220.2 SmLINC02255-IBu 0.80 2.00e-04 2.80e-03
Smp_055220.2 SmLINC02657-IBu 0.83 1.00e-04 1.60e-03
Smp_055220.2 SmLINC02678-IBu 0.80 3.00e-04 3.40e-03
Smp_055220.2 SmLINC06892-IBu 0.84 7.04e-05 1.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00998-IBu 0 -1.77 -2.82 -9.23 -9.23
Smp_055220.2 0 -2.15 -2.21 -13.10 -13.10
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_168380.1 0 -1.89 -2.82 -9.66 -9.66
Smp_182880.1 0 -2.14 -2.31 -8.86 -9.55
Smp_190190.1 0 -1.71 -0.81 -9.39 -9.39
Smp_194000.1 0 -1.48 -1.97 -6.64 -8.23
Smp_205080.1 0 -1.33 -0.97 -6.34 -7.04

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_055220.2 SmLINC00998-IBu 0.90 3.98e-06 1.00e-04
Smp_097750.1 Smp_055220.2 0.90 4.79e-06 1.00e-04
Smp_106390.1 Smp_055220.2 0.90 3.62e-06 1.00e-04
Smp_108050.1 Smp_055220.2 0.91 1.22e-06 6.14e-05
Smp_145710.1 Smp_055220.2 0.90 2.76e-06 1.00e-04
Smp_145810.2 Smp_055220.2 0.94 6.18e-08 7.79e-06
Smp_168380.1 Smp_055220.2 0.92 5.24e-07 3.39e-05
Smp_182880.1 Smp_055220.2 0.94 8.89e-08 9.98e-06
Smp_190190.1 Smp_055220.2 0.90 3.06e-06 1.00e-04
Smp_194000.1 Smp_055220.2 0.90 4.55e-06 1.00e-04
Smp_205080.1 Smp_055220.2 0.90 4.74e-06 1.00e-04