Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_055210.1 Data

Correlation between Smp_055210.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_055210.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_055210.1 0 -1.70 -3.76 -4.03 -3.39

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_055210.1 SmLINC02255-IBu 0.89 5.60e-06 1.00e-04
Smp_055210.1 SmLINC02630-IBu 0.87 2.04e-05 4.00e-04
Smp_055210.1 SmLINC02657-IBu 0.87 2.39e-05 5.00e-04
Smp_055210.1 SmLINC02678-IBu 0.83 1.00e-04 1.60e-03
Smp_055210.1 SmLINC02888-IBu 0.83 1.00e-04 1.50e-03
Smp_055210.1 SmLINC05284-IBu 0.80 3.00e-04 3.30e-03
Smp_055210.1 SmLINC05989-IBu 0.93 2.68e-07 2.03e-05
Smp_055210.1 SmLINC06128-IBu 0.93 4.37e-07 2.86e-05
Smp_055210.1 SmLINC06535-IBu 0.84 7.98e-05 1.10e-03
Smp_055210.1 SmLINC06903-IBu 0.86 3.07e-05 5.00e-04

Correlation between Smp_055210.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_055210.1 0 -1.70 -3.76 -4.03 -3.39
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_055210.1 Smp_018880.1 0.92 8.11e-07 4.60e-05
Smp_055210.1 Smp_035090.2 0.97 1.94e-09 7.79e-07
Smp_106390.1 Smp_055210.1 0.92 9.55e-07 5.16e-05
Smp_055210.1 Smp_134410.1 0.95 4.74e-08 6.52e-06
Smp_055210.1 Smp_145810.2 0.90 2.63e-06 1.00e-04
Smp_055210.1 Smp_149670.1 0.97 3.77e-10 2.73e-07