Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_054750.1 Data

Correlation between Smp_054750.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_054750.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_054750.1 0 -0.22 -0.71 -3.93 -4.21

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_054750.1 SmLINC00001-IBu -0.83 1.00e-04 1.60e-03
Smp_054750.1 SmLINC00004-IBu -0.86 2.98e-05 5.00e-04
Smp_054750.1 SmLINC00369-IBu -0.85 4.53e-05 7.00e-04
Smp_054750.1 SmLINC00525-IBu -0.88 9.91e-06 2.00e-04
Smp_054750.1 SmLINC00633-IBu -0.81 2.00e-04 2.50e-03
Smp_054750.1 SmLINC01084-IBu -0.90 3.17e-06 1.00e-04
Smp_054750.1 SmLINC01122-IBu -0.81 2.00e-04 2.30e-03
Smp_054750.1 SmLINC01316-IBu 0.87 1.86e-05 4.00e-04
Smp_054750.1 SmLINC01431-IBu -0.88 1.24e-05 3.00e-04
Smp_054750.1 SmLINC01569-IBu -0.80 2.00e-04 2.90e-03
Smp_054750.1 SmLINC02084-IBu -0.86 3.86e-05 7.00e-04
Smp_054750.1 SmLINC02394-IBu -0.82 1.00e-04 1.70e-03
Smp_054750.1 SmLINC02546-IBu -0.82 1.00e-04 1.70e-03
Smp_054750.1 SmLINC02646-IBu 0.80 2.00e-04 3.10e-03
Smp_054750.1 SmLINC03395-IBu 0.85 5.34e-05 8.00e-04
Smp_054750.1 SmLINC03927-IBu -0.81 1.00e-04 2.20e-03
Smp_054750.1 SmLINC04074-IBu 0.84 6.12e-05 9.00e-04
Smp_054750.1 SmLINC04421-IBu -0.85 4.73e-05 8.00e-04
Smp_054750.1 SmLINC04423-IBu -0.85 4.94e-05 8.00e-04
Smp_054750.1 SmLINC04478-IBu -0.82 1.00e-04 1.70e-03
Smp_054750.1 SmLINC04521-IBu -0.82 1.00e-04 1.90e-03
Smp_054750.1 SmLINC05147-IBu -0.82 1.00e-04 1.70e-03
Smp_054750.1 SmLINC05289-IBu -0.84 8.45e-05 1.20e-03
Smp_054750.1 SmLINC05604-IBu -0.85 4.60e-05 8.00e-04
Smp_054750.1 SmLINC06024-IBu -0.92 5.56e-07 3.39e-05
Smp_054750.1 SmLINC06145-IBu -0.81 2.00e-04 2.50e-03
Smp_054750.1 SmLINC06489-IBu 0.85 4.46e-05 7.00e-04
Smp_054750.1 SmLINC06490-IBu 0.92 7.08e-07 4.01e-05
Smp_054750.1 SmLINC06646-IBu 0.84 8.28e-05 1.20e-03

Correlation between Smp_054750.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_054750.1 0 -0.22 -0.71 -3.93 -4.21
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_205060.1 0 0.36 1.28 -6.63 -10.51
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033260.1 Smp_054750.1 -0.90 4.19e-06 1.00e-04
Smp_038870.2 Smp_054750.1 -0.93 3.15e-07 2.38e-05
Smp_054750.1 Smp_168800.1 0.93 2.68e-07 2.13e-05
Smp_205060.1 Smp_054750.1 0.90 4.08e-06 1.00e-04
Smp_212510.1 Smp_054750.1 0.93 3.91e-07 2.77e-05