Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_054010.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_054010.1 0 0.77 2.59 2.00 4.82

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_054010.1 SmLINC04235-IBu 0.80 2.00e-04 2.80e-03
Smp_054010.1 SmLINC06239-IBu 0.87 1.86e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_054010.1 0 0.77 2.59 2.00 4.82
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_191910.1 0 -4.11 -4.11 6.38 13.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_054010.1 0.91 2.16e-06 9.21e-05
Smp_054010.1 Smp_000410.1 0.92 6.20e-07 3.81e-05
Smp_054010.1 Smp_000420.1 0.93 3.05e-07 2.33e-05
Smp_054010.1 Smp_033250.1 0.93 4.07e-07 2.85e-05
Smp_054010.1 Smp_058160.1 0.90 4.60e-06 1.00e-04
Smp_054010.1 Smp_077920.1 0.93 3.80e-07 2.71e-05
Smp_054010.1 Smp_131110.2 0.92 6.13e-07 3.78e-05
Smp_054010.1 Smp_144440.1 0.93 4.36e-07 2.99e-05
Smp_054010.1 Smp_155310.1 0.93 3.54e-07 2.58e-05
Smp_054010.1 Smp_155310.2 0.91 2.13e-06 9.10e-05
Smp_054010.1 Smp_175560.1 0.93 2.42e-07 1.99e-05
Smp_054010.1 Smp_191910.1 0.93 3.17e-07 2.40e-05