Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

  1. Home
  2. Smp_053940.1

Smp_053940.1 Data

Correlation between Smp_053940.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_053940.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_053940.1 0 -1.21 -1.57 -5.40 -5.18

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_053940.1 SmLINC00001-IBu -0.84 6.00e-05 9.00e-04
Smp_053940.1 SmLINC00004-IBu -0.86 2.97e-05 5.00e-04
Smp_053940.1 SmLINC00369-IBu -0.86 2.55e-05 5.00e-04
Smp_053940.1 SmLINC00376-IBu -0.89 8.64e-06 2.00e-04
Smp_053940.1 SmLINC00525-IBu -0.85 5.42e-05 9.00e-04
Smp_053940.1 SmLINC00633-IBu -0.83 1.00e-04 1.50e-03
Smp_053940.1 SmLINC01084-IBu -0.88 1.46e-05 3.00e-04
Smp_053940.1 SmLINC01122-IBu -0.82 1.00e-04 1.80e-03
Smp_053940.1 SmLINC01171-IBu -0.82 1.00e-04 2.00e-03
Smp_053940.1 SmLINC01431-IBu -0.89 6.67e-06 1.00e-04
Smp_053940.1 SmLINC01432-IBu -0.80 2.00e-04 3.10e-03
Smp_053940.1 SmLINC01538-IBu -0.80 3.00e-04 3.30e-03
Smp_053940.1 SmLINC01569-IBu -0.81 1.00e-04 2.20e-03
Smp_053940.1 SmLINC01733-IBu -0.82 1.00e-04 1.90e-03
Smp_053940.1 SmLINC02084-IBu -0.87 1.80e-05 4.00e-04
Smp_053940.1 SmLINC02255-IBu 0.87 1.81e-05 4.00e-04
Smp_053940.1 SmLINC02394-IBu -0.82 1.00e-04 1.70e-03
Smp_053940.1 SmLINC02545-IBu -0.80 3.00e-04 3.30e-03
Smp_053940.1 SmLINC02546-IBu -0.83 1.00e-04 1.40e-03
Smp_053940.1 SmLINC02630-IBu 0.90 2.79e-06 1.00e-04
Smp_053940.1 SmLINC02657-IBu 0.82 1.00e-04 1.90e-03
Smp_053940.1 SmLINC03693-IBu -0.82 1.00e-04 2.00e-03
Smp_053940.1 SmLINC03927-IBu -0.83 9.08e-05 1.30e-03
Smp_053940.1 SmLINC04421-IBu -0.89 5.65e-06 1.00e-04
Smp_053940.1 SmLINC04423-IBu -0.82 1.00e-04 1.70e-03
Smp_053940.1 SmLINC04478-IBu -0.82 1.00e-04 1.90e-03
Smp_053940.1 SmLINC04521-IBu -0.83 1.00e-04 1.50e-03
Smp_053940.1 SmLINC04684-IBu -0.81 1.00e-04 2.30e-03
Smp_053940.1 SmLINC05147-IBu -0.81 1.00e-04 2.20e-03
Smp_053940.1 SmLINC05258-IBu -0.81 2.00e-04 2.30e-03
Smp_053940.1 SmLINC05284-IBu 0.84 8.40e-05 1.20e-03
Smp_053940.1 SmLINC05289-IBu -0.84 8.50e-05 1.20e-03
Smp_053940.1 SmLINC05604-IBu -0.85 5.24e-05 8.00e-04
Smp_053940.1 SmLINC06024-IBu -0.84 7.80e-05 1.10e-03
Smp_053940.1 SmLINC06145-IBu -0.81 1.00e-04 2.10e-03
Smp_053940.1 SmLINC06535-IBu 0.83 1.00e-04 1.40e-03

Correlation between Smp_053940.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_053940.1 0 -1.21 -1.57 -5.40 -5.18
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_092880.1 0 -1.02 -1.51 -9.62 -13.17
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_154010.1 0 -1.98 -1.23 -7.66 -10.11

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033260.1 Smp_053940.1 -0.90 3.38e-06 1.00e-04
Smp_050350.3 Smp_053940.1 -0.92 1.13e-06 5.83e-05
Smp_053940.1 Smp_079420.1 -0.91 1.84e-06 8.22e-05
Smp_092880.1 Smp_053940.1 0.91 2.44e-06 1.00e-04
Smp_053940.1 Smp_137000.2 -0.92 6.00e-07 3.73e-05
Smp_053940.1 Smp_154010.1 0.91 1.97e-06 8.60e-05