Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_053830.1 Data

Correlation between Smp_053830.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_053830.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_053830.1 0 -0.20 -1.48 -4.87 -3.36

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_053830.1 SmLINC00004-IBu -0.80 2.00e-04 3.00e-03
Smp_053830.1 SmLINC00294-IBu 0.81 1.00e-04 2.30e-03
Smp_053830.1 SmLINC00369-IBu -0.81 2.00e-04 2.70e-03
Smp_053830.1 SmLINC00376-IBu -0.82 1.00e-04 1.90e-03
Smp_053830.1 SmLINC00525-IBu -0.86 3.32e-05 6.00e-04
Smp_053830.1 SmLINC01084-IBu -0.85 3.96e-05 7.00e-04
Smp_053830.1 SmLINC01431-IBu -0.83 1.00e-04 1.50e-03
Smp_053830.1 SmLINC02026-IBu 0.89 5.92e-06 1.00e-04
Smp_053830.1 SmLINC02084-IBu -0.81 1.00e-04 2.30e-03
Smp_053830.1 SmLINC04421-IBu -0.83 1.00e-04 1.50e-03
Smp_053830.1 SmLINC06024-IBu -0.86 2.72e-05 5.00e-04
Smp_053830.1 SmLINC06490-IBu 0.93 2.17e-07 1.75e-05

Correlation between Smp_053830.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_053830.1 0 -0.20 -1.48 -4.87 -3.36
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_086600.1 Smp_053830.1 0.94 1.14e-07 1.19e-05
Smp_184180.1 Smp_053830.1 0.97 3.10e-10 2.41e-07
Smp_194060.1 Smp_053830.1 0.91 2.25e-06 9.46e-05
Smp_212510.1 Smp_053830.1 0.92 5.20e-07 3.37e-05