Schistosoma mansoni lncRNAs Database

This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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2. Smp_052060.1

Smp_052060.1 Data

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Correlation between Smp_052060.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Expression Fold Change Data [log₂(FC)] - Download data

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Pearson Correlation Coefficient Data - Download data

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Correlation between Smp_052060.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Expression Fold Change Data [log₂(FC)] - Download data

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Gene ID	Cerc	3S	24S	Male	Female
SmLINC02039-IBu	0	-3.01	-8.41	-3.05	-3.36
SmLINC02678-IBu	0	-3.18	-2.40	-3.22	-5.56
SmLINC02888-IBu	0	-1.98	-4.28	-4.50	-5.76
SmLINC05989-IBu	0	-1.59	-3.64	-6.05	-6.59
SmLINC06128-IBu	0	-1.91	-4.82	-10.42	-10.44
SmLINC06903-IBu	0	-1.36	-4.25	-5.91	-3.41
Smp_052060.1	0	-2.31	-3.14	-4.09	-3.50

Pearson Correlation Coefficient Data - Download data

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Compared Gene	Gene	Pearson Correlation Value	p-value	B.-H. adjusted p-value
Smp_052060.1	SmLINC02039-IBu	0.87	2.01e-05	4.00e-04
Smp_052060.1	SmLINC02678-IBu	0.91	1.60e-06	7.17e-05
Smp_052060.1	SmLINC02888-IBu	0.89	5.52e-06	1.00e-04
Smp_052060.1	SmLINC05989-IBu	0.88	1.02e-05	2.00e-04
Smp_052060.1	SmLINC06128-IBu	0.92	6.16e-07	3.64e-05
Smp_052060.1	SmLINC06903-IBu	0.82	1.00e-04	1.90e-03

Correlation between Smp_052060.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Expression Fold Change Data [log₂(FC)] - Download data

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Gene ID	Cerc	3S	24S	Male	Female
Smp_016200.1	0	-3.14	-11.01	-6.75	-11.01
Smp_018880.1	0	-2.71	-8.49	-10.03	-6.16
Smp_035090.2	0	-1.41	-2.69	-14.78	-14.86
Smp_052060.1	0	-2.31	-3.14	-4.09	-3.50
Smp_055770.1	0	-5.16	-5.96	-12.28	-12.28
Smp_071380.2	0	-3.62	-7.62	-10.38	-10.26
Smp_079970.1	0	-3.36	-6.77	-9.16	-12.28
Smp_102670.1	0	-2.95	-8.79	-12.62	-12.62
Smp_106390.1	0	-2.35	-4.90	-10.78	-6.23
Smp_133770.1	0	-4.18	-7.68	-11.38	-11.45
Smp_134410.1	0	-2.22	-3.88	-6.81	-12.78
Smp_149670.1	0	-1.98	-3.69	-10.45	-9.35
Smp_152780.1	0	-4.06	-8.92	-8.72	-11.55
Smp_153240.1	0	-4.59	-8.67	-11.23	-11.04
Smp_169190.1	0	-3.08	-5.99	-19.20	-16.89
Smp_178240.1	0	-3.79	-9.33	-8.87	-11.00
Smp_185360.1	0	-2.43	-5.85	-12.83	-12.83

Pearson Correlation Coefficient Data - Download data

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Compared Gene	Gene	Pearson Correlation Value	p-value	B.-H. adjusted p-value
Smp_016200.1	Smp_052060.1	0.90	3.70e-06	1.00e-04
Smp_052060.1	Smp_018880.1	0.96	3.00e-09	1.03e-06
Smp_052060.1	Smp_035090.2	0.90	3.29e-06	1.00e-04
Smp_055770.1	Smp_052060.1	0.90	4.26e-06	1.00e-04
Smp_052060.1	Smp_071380.2	0.95	4.62e-08	6.40e-06
Smp_079970.1	Smp_052060.1	0.90	4.46e-06	1.00e-04
Smp_102670.1	Smp_052060.1	0.95	2.51e-08	4.24e-06
Smp_106390.1	Smp_052060.1	0.94	1.51e-07	1.43e-05
Smp_052060.1	Smp_133770.1	0.93	3.49e-07	2.56e-05
Smp_134410.1	Smp_052060.1	0.95	3.25e-08	5.04e-06
Smp_149670.1	Smp_052060.1	0.96	4.57e-09	1.36e-06
Smp_052060.1	Smp_152780.1	0.91	1.27e-06	6.33e-05
Smp_052060.1	Smp_153240.1	0.94	1.68e-07	1.54e-05
Smp_169190.1	Smp_052060.1	0.94	1.36e-07	1.34e-05
Smp_178240.1	Smp_052060.1	0.93	3.92e-07	2.77e-05
Smp_185360.1	Smp_052060.1	0.91	1.53e-06	7.20e-05