Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_052060.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_052060.1 SmLINC02039-IBu 0.87 2.01e-05 4.00e-04
Smp_052060.1 SmLINC02678-IBu 0.91 1.60e-06 7.17e-05
Smp_052060.1 SmLINC02888-IBu 0.89 5.52e-06 1.00e-04
Smp_052060.1 SmLINC05989-IBu 0.88 1.02e-05 2.00e-04
Smp_052060.1 SmLINC06128-IBu 0.92 6.16e-07 3.64e-05
Smp_052060.1 SmLINC06903-IBu 0.82 1.00e-04 1.90e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016200.1 Smp_052060.1 0.90 3.70e-06 1.00e-04
Smp_052060.1 Smp_018880.1 0.96 3.00e-09 1.03e-06
Smp_052060.1 Smp_035090.2 0.90 3.29e-06 1.00e-04
Smp_055770.1 Smp_052060.1 0.90 4.26e-06 1.00e-04
Smp_052060.1 Smp_071380.2 0.95 4.62e-08 6.40e-06
Smp_079970.1 Smp_052060.1 0.90 4.46e-06 1.00e-04
Smp_102670.1 Smp_052060.1 0.95 2.51e-08 4.24e-06
Smp_106390.1 Smp_052060.1 0.94 1.51e-07 1.43e-05
Smp_052060.1 Smp_133770.1 0.93 3.49e-07 2.56e-05
Smp_134410.1 Smp_052060.1 0.95 3.25e-08 5.04e-06
Smp_149670.1 Smp_052060.1 0.96 4.57e-09 1.36e-06
Smp_052060.1 Smp_152780.1 0.91 1.27e-06 6.33e-05
Smp_052060.1 Smp_153240.1 0.94 1.68e-07 1.54e-05
Smp_169190.1 Smp_052060.1 0.94 1.36e-07 1.34e-05
Smp_178240.1 Smp_052060.1 0.93 3.92e-07 2.77e-05
Smp_185360.1 Smp_052060.1 0.91 1.53e-06 7.20e-05