Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_051920.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
Smp_051920.1 0 0.00 0.00 7.75 7.45

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_051920.1 SmLINC00633-IBu 0.83 1.00e-04 1.50e-03
Smp_051920.1 SmLINC01432-IBu 0.80 2.00e-04 3.00e-03
Smp_051920.1 SmLINC01433-IBu 0.81 1.00e-04 2.20e-03
Smp_051920.1 SmLINC03542-IBu 0.80 3.00e-04 3.30e-03
Smp_051920.1 SmLINC03693-IBu 0.80 2.00e-04 3.10e-03
Smp_051920.1 SmLINC05147-IBu 0.86 3.63e-05 6.00e-04
Smp_051920.1 SmLINC06538-IBu 0.81 1.00e-04 2.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_051920.1 0 0.00 0.00 7.75 7.45
Smp_177580.1 0 3.28 2.12 11.83 11.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_177580.1 Smp_051920.1 0.93 3.44e-07 2.53e-05