Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_051230.4 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_051230.4 SmLINC00282-IBu 0.81 2.00e-04 2.70e-03
Smp_051230.4 SmLINC02255-IBu 0.84 7.21e-05 1.10e-03
Smp_051230.4 SmLINC02630-IBu 0.83 9.23e-05 1.30e-03
Smp_051230.4 SmLINC03769-IBu 0.85 5.72e-05 9.00e-04
Smp_051230.4 SmLINC03848-IBu 0.86 2.86e-05 5.00e-04
Smp_051230.4 SmLINC03930-IBu 0.80 3.00e-04 3.20e-03
Smp_051230.4 SmLINC05284-IBu 0.81 2.00e-04 2.60e-03
Smp_051230.4 SmLINC05989-IBu 0.92 8.17e-07 4.44e-05
Smp_051230.4 SmLINC05990-IBu -0.80 3.00e-04 3.30e-03
Smp_051230.4 SmLINC06128-IBu 0.87 1.86e-05 4.00e-04
Smp_051230.4 SmLINC06535-IBu 0.88 1.30e-05 3.00e-04
Smp_051230.4 SmLINC06903-IBu 0.84 7.51e-05 1.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00565-IBu 0 -1.33 -5.82 -10.51 -4.87
SmLINC01707-IBu 0 -1.39 -3.43 -3.89 -3.93
SmLINC02455-IBu 0 -0.81 -2.44 -4.53 -4.60
SmLINC04166-IBu 0 -0.32 -5.44 -5.44 -5.07
SmLINC04385-IBu 0 -0.57 -4.82 -5.77 -7.80
SmLINC04450-IBu 0 -0.63 -2.31 -4.52 -5.41
SmLINC04598-IBu 0 -0.68 -2.61 -7.38 -7.35
SmLINC04864-IBu 0 -1.31 -6.10 -2.71 -3.51
SmLINC05307-IBu 0 -0.24 -3.06 -4.14 -6.23
SmLINC05971-IBu 0 -0.67 -3.32 -4.64 -5.79
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06240-IBu 0 -1.33 -10.34 -6.03 -6.09
SmLINC06405-IBu 0 -1.11 -2.49 -5.22 -6.11
SmLINC06441-IBu 0 -0.94 -2.22 -5.00 -6.40
SmLINC06907-IBu 0 -0.27 -2.50 -6.73 -7.63
SmLINC06982-IBu 0 -0.48 -2.87 -3.87 -4.33
Smp_001830.2 0 -0.90 -12.67 -2.68 -4.83
Smp_004230.1 0 -1.29 -9.36 -9.36 -9.36
Smp_009310.1 0 -0.72 -2.94 -4.33 -4.64
Smp_018510.1 0 -0.95 -2.76 -7.05 -6.82
Smp_021060.1 0 -1.00 -2.60 -4.96 -6.87
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_035310.1 0 -1.02 -2.20 -5.71 -5.71
Smp_038730.10 0 -0.83 -3.49 -7.38 -8.47
Smp_042160.2 0 -1.15 -4.96 -5.11 -6.09
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_100790.1 0 -1.29 -9.36 -9.36 -9.36
Smp_114740.1 0 -1.29 -9.36 -9.36 -9.36
Smp_124150.1 0 -1.14 -4.97 -8.99 -7.14
Smp_125090.1 0 -1.49 -2.90 -8.82 -8.63
Smp_139790.1 0 -0.75 -6.56 -6.76 -3.63
Smp_141630.1 0 -0.98 -2.37 -8.56 -9.70
Smp_150450.1 0 -0.77 -4.60 -4.36 -4.30
Smp_157450.1 0 -1.07 -2.97 -4.27 -4.05
Smp_159900.1 0 -1.03 -2.21 -4.34 -4.82
Smp_160000.2 0 6.42 8.33 8.49 8.70
Smp_162070.1 0 -0.47 -3.26 -7.76 -6.95
Smp_162370.1 0 -1.45 -4.56 -9.04 -5.93
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_178400.1 0 -0.69 -3.92 -8.55 -3.91
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_191250.1 0 -0.43 -3.38 -7.55 -8.30
Smp_195060.1 0 -0.69 -4.00 -2.76 -3.57
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_199470.1 0 -0.59 -3.42 -6.26 -6.59
Smp_200710.1 0 0.16 -1.95 -5.45 -5.45
Smp_212290.1 0 -0.97 -5.67 -5.14 -6.52

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_051230.4 SmLINC00565-IBu 0.91 1.48e-06 7.06e-05
Smp_051230.4 SmLINC01707-IBu 0.96 8.16e-09 1.99e-06
Smp_051230.4 SmLINC02455-IBu 0.90 3.39e-06 1.00e-04
Smp_051230.4 SmLINC04166-IBu 0.91 2.16e-06 9.19e-05
Smp_051230.4 SmLINC04385-IBu 0.91 2.10e-06 9.02e-05
Smp_051230.4 SmLINC04450-IBu 0.91 1.50e-06 7.10e-05
Smp_051230.4 SmLINC04598-IBu 0.93 1.98e-07 1.73e-05
Smp_051230.4 SmLINC04864-IBu 0.91 1.47e-06 7.01e-05
Smp_051230.4 SmLINC05307-IBu 0.90 4.41e-06 1.00e-04
Smp_051230.4 SmLINC05971-IBu 0.90 3.49e-06 1.00e-04
Smp_051230.4 SmLINC05989-IBu 0.92 8.17e-07 4.62e-05
Smp_051230.4 SmLINC06240-IBu 0.94 6.67e-08 8.21e-06
Smp_051230.4 SmLINC06405-IBu 0.92 8.50e-07 4.76e-05
Smp_051230.4 SmLINC06441-IBu 0.92 6.46e-07 3.93e-05
Smp_051230.4 SmLINC06907-IBu 0.90 3.79e-06 1.00e-04
Smp_051230.4 SmLINC06982-IBu 0.90 3.18e-06 1.00e-04
Smp_001830.2 Smp_051230.4 0.93 2.77e-07 2.18e-05
Smp_004230.1 Smp_051230.4 0.91 1.62e-06 7.51e-05
Smp_009310.1 Smp_051230.4 0.94 1.60e-07 1.49e-05
Smp_018510.1 Smp_051230.4 0.94 9.24e-08 1.02e-05
Smp_021060.1 Smp_051230.4 0.91 1.53e-06 7.23e-05
Smp_034940.3 Smp_051230.4 0.90 2.58e-06 1.00e-04
Smp_035310.1 Smp_051230.4 0.90 3.27e-06 1.00e-04
Smp_038730.10 Smp_051230.4 0.91 2.25e-06 9.47e-05
Smp_042160.2 Smp_051230.4 0.93 2.94e-07 2.27e-05
Smp_051230.4 Smp_051230.3 0.96 3.94e-09 1.23e-06
Smp_083180.1 Smp_051230.4 0.96 6.23e-09 1.67e-06
Smp_097750.1 Smp_051230.4 0.90 3.73e-06 1.00e-04
Smp_100790.1 Smp_051230.4 0.91 1.62e-06 7.51e-05
Smp_114740.1 Smp_051230.4 0.91 1.62e-06 7.51e-05
Smp_124150.1 Smp_051230.4 0.92 1.03e-06 5.46e-05
Smp_125090.1 Smp_051230.4 0.90 3.98e-06 1.00e-04
Smp_139790.1 Smp_051230.4 0.95 3.00e-08 4.78e-06
Smp_141630.1 Smp_051230.4 0.90 4.21e-06 1.00e-04
Smp_150450.1 Smp_051230.4 0.91 1.50e-06 7.10e-05
Smp_157450.1 Smp_051230.4 0.95 5.21e-08 6.95e-06
Smp_051230.4 Smp_159900.1 0.91 1.21e-06 6.12e-05
Smp_160000.2 Smp_051230.4 -0.90 3.47e-06 1.00e-04
Smp_162070.1 Smp_051230.4 0.93 2.23e-07 1.87e-05
Smp_162370.1 Smp_051230.4 0.97 1.21e-09 5.77e-07
Smp_168080.2 Smp_051230.4 0.95 2.33e-08 4.02e-06
Smp_051230.4 Smp_178400.1 0.93 2.36e-07 1.95e-05
Smp_051230.4 Smp_182770.1 0.90 3.32e-06 1.00e-04
Smp_185220.1 Smp_051230.4 0.94 1.80e-07 1.62e-05
Smp_188900.1 Smp_051230.4 0.92 1.01e-06 5.39e-05
Smp_191250.1 Smp_051230.4 0.90 3.09e-06 1.00e-04
Smp_195060.1 Smp_051230.4 0.92 7.81e-07 4.48e-05
Smp_195070.1 Smp_051230.4 0.97 1.25e-09 5.89e-07
Smp_195160.1 Smp_051230.4 0.91 1.92e-06 8.46e-05
Smp_199470.1 Smp_051230.4 0.92 1.02e-06 5.43e-05
Smp_200710.1 Smp_051230.4 0.91 2.43e-06 9.99e-05
Smp_212290.1 Smp_051230.4 0.90 4.13e-06 1.00e-04