Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_051230.3 Data

Correlation between Smp_051230.3 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_051230.3 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_051230.3 SmLINC02255-IBu 0.87 1.93e-05 4.00e-04
Smp_051230.3 SmLINC02630-IBu 0.85 5.92e-05 9.00e-04
Smp_051230.3 SmLINC02657-IBu 0.85 5.94e-05 9.00e-04
Smp_051230.3 SmLINC03769-IBu 0.84 6.59e-05 1.00e-03
Smp_051230.3 SmLINC03848-IBu 0.81 2.00e-04 2.50e-03
Smp_051230.3 SmLINC05632-IBu -0.81 2.00e-04 2.30e-03
Smp_051230.3 SmLINC05989-IBu 0.94 1.29e-07 1.22e-05
Smp_051230.3 SmLINC05990-IBu -0.84 8.21e-05 1.20e-03
Smp_051230.3 SmLINC06128-IBu 0.95 2.01e-08 3.43e-06
Smp_051230.3 SmLINC06535-IBu 0.83 9.71e-05 1.30e-03
Smp_051230.3 SmLINC06903-IBu 0.88 1.21e-05 3.00e-04

Correlation between Smp_051230.3 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_176430.2 0 9.09 10.43 10.57 10.62
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018880.1 Smp_051230.3 0.93 3.06e-07 2.34e-05
Smp_034940.3 Smp_051230.3 0.95 3.01e-08 4.79e-06
Smp_035090.2 Smp_051230.3 0.92 9.76e-07 5.24e-05
Smp_051230.4 Smp_051230.3 0.96 3.94e-09 1.23e-06
Smp_083180.1 Smp_051230.3 0.92 9.18e-07 5.02e-05
Smp_106390.1 Smp_051230.3 0.91 1.69e-06 7.75e-05
Smp_109240.1 Smp_051230.3 0.91 2.30e-06 9.62e-05
Smp_134410.1 Smp_051230.3 0.95 2.97e-08 4.74e-06
Smp_145810.2 Smp_051230.3 0.92 9.93e-07 5.31e-05
Smp_149670.1 Smp_051230.3 0.94 1.00e-07 1.08e-05
Smp_168080.2 Smp_051230.3 0.95 3.62e-08 5.43e-06
Smp_176430.2 Smp_051230.3 -0.90 3.80e-06 1.00e-04
Smp_188900.1 Smp_051230.3 0.94 1.10e-07 1.15e-05
Smp_195070.1 Smp_051230.3 0.97 1.97e-09 7.88e-07