Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_051070.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_051070.1 0 0.99 2.32 3.90 4.45

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_051070.1 SmLINC00266-IBu 0.82 1.00e-04 1.70e-03
Smp_051070.1 SmLINC00282-IBu -0.80 2.00e-04 2.90e-03
Smp_051070.1 SmLINC00369-IBu 0.84 7.10e-05 1.10e-03
Smp_051070.1 SmLINC00556-IBu -0.84 8.11e-05 1.20e-03
Smp_051070.1 SmLINC00633-IBu 0.83 1.00e-04 1.60e-03
Smp_051070.1 SmLINC01084-IBu 0.82 1.00e-04 1.70e-03
Smp_051070.1 SmLINC01431-IBu 0.83 9.61e-05 1.30e-03
Smp_051070.1 SmLINC01432-IBu 0.87 1.93e-05 4.00e-04
Smp_051070.1 SmLINC01435-IBu 0.80 2.00e-04 2.90e-03
Smp_051070.1 SmLINC02084-IBu 0.85 4.34e-05 7.00e-04
Smp_051070.1 SmLINC02255-IBu -0.89 5.74e-06 1.00e-04
Smp_051070.1 SmLINC02630-IBu -0.86 3.32e-05 6.00e-04
Smp_051070.1 SmLINC02657-IBu -0.89 5.36e-06 1.00e-04
Smp_051070.1 SmLINC03108-IBu 0.82 1.00e-04 2.00e-03
Smp_051070.1 SmLINC03693-IBu 0.83 9.25e-05 1.30e-03
Smp_051070.1 SmLINC03849-IBu -0.81 2.00e-04 2.40e-03
Smp_051070.1 SmLINC03927-IBu 0.84 7.15e-05 1.10e-03
Smp_051070.1 SmLINC04421-IBu 0.87 1.97e-05 4.00e-04
Smp_051070.1 SmLINC04521-IBu 0.82 1.00e-04 2.10e-03
Smp_051070.1 SmLINC05147-IBu 0.85 5.32e-05 8.00e-04
Smp_051070.1 SmLINC05274-IBu -0.80 2.00e-04 2.80e-03
Smp_051070.1 SmLINC05284-IBu -0.85 5.56e-05 9.00e-04
Smp_051070.1 SmLINC05604-IBu 0.83 1.00e-04 1.60e-03
Smp_051070.1 SmLINC06128-IBu -0.80 3.00e-04 3.40e-03
Smp_051070.1 SmLINC06221-IBu 0.83 1.00e-04 1.50e-03
Smp_051070.1 SmLINC06535-IBu -0.87 2.24e-05 4.00e-04
Smp_051070.1 SmLINC06543-IBu 0.83 1.00e-04 1.50e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_051070.1 0 0.99 2.32 3.90 4.45
Smp_055340.2 0 8.73 10.47 12.13 12.52

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_051070.1 Smp_035090.2 -0.91 2.29e-06 9.57e-05
Smp_051070.1 Smp_055340.2 0.90 3.70e-06 1.00e-04