Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_049300.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03406-IBu 0 4.88 2.89 -1.93 3.48
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06669-IBu 0 8.70 4.94 4.70 6.60
Smp_049300.3 0 1.86 -0.79 -4.47 -2.75

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_049300.3 SmLINC00026-IBu 0.95 1.64e-08 2.99e-06
Smp_049300.3 SmLINC00037-IBu 0.93 2.32e-07 1.84e-05
Smp_049300.3 SmLINC00133-IBu 0.94 1.87e-07 1.58e-05
Smp_049300.3 SmLINC00282-IBu 0.89 7.91e-06 2.00e-04
Smp_049300.3 SmLINC00294-IBu 0.87 1.55e-05 3.00e-04
Smp_049300.3 SmLINC00893-IBu 0.98 9.98e-11 1.06e-07
Smp_049300.3 SmLINC01462-IBu 0.95 1.67e-08 3.02e-06
Smp_049300.3 SmLINC01486-IBu 0.95 2.80e-08 4.29e-06
Smp_049300.3 SmLINC01637-IBu 0.89 5.16e-06 1.00e-04
Smp_049300.3 SmLINC03056-IBu 0.96 4.45e-09 1.24e-06
Smp_049300.3 SmLINC03362-IBu 0.96 6.57e-09 1.61e-06
Smp_049300.3 SmLINC03395-IBu 0.81 2.00e-04 2.40e-03
Smp_049300.3 SmLINC03406-IBu 0.84 6.07e-05 9.00e-04
Smp_049300.3 SmLINC03443-IBu 0.82 1.00e-04 1.70e-03
Smp_049300.3 SmLINC03930-IBu 0.81 1.00e-04 2.20e-03
Smp_049300.3 SmLINC04075-IBu 0.96 7.42e-09 1.75e-06
Smp_049300.3 SmLINC04106-IBu 0.94 1.55e-07 1.39e-05
Smp_049300.3 SmLINC04129-IBu 0.94 8.14e-08 8.90e-06
Smp_049300.3 SmLINC04144-IBu 0.81 1.00e-04 2.20e-03
Smp_049300.3 SmLINC04178-IBu 0.96 4.66e-09 1.28e-06
Smp_049300.3 SmLINC04271-IBu 0.94 1.00e-07 1.03e-05
Smp_049300.3 SmLINC04366-IBu 0.87 1.83e-05 4.00e-04
Smp_049300.3 SmLINC04940-IBu 0.96 5.05e-09 1.35e-06
Smp_049300.3 SmLINC05178-IBu 0.93 3.96e-07 2.67e-05
Smp_049300.3 SmLINC05716-IBu 0.90 3.93e-06 1.00e-04
Smp_049300.3 SmLINC05720-IBu 0.82 1.00e-04 2.10e-03
Smp_049300.3 SmLINC05840-IBu 0.91 1.24e-06 6.00e-05
Smp_049300.3 SmLINC05887-IBu 0.97 8.19e-10 4.15e-07
Smp_049300.3 SmLINC05888-IBu 0.98 7.93e-11 9.19e-08
Smp_049300.3 SmLINC06138-IBu 0.94 1.53e-07 1.37e-05
Smp_049300.3 SmLINC06210-IBu 0.95 1.69e-08 3.04e-06
Smp_049300.3 SmLINC06436-IBu 0.81 2.00e-04 2.40e-03
Smp_049300.3 SmLINC06669-IBu 0.93 3.02e-07 2.21e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_049300.3 0 1.86 -0.79 -4.47 -2.75
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_125070.1 Smp_049300.3 0.90 3.74e-06 1.00e-04
Smp_184710.1 Smp_049300.3 0.93 2.24e-07 1.88e-05
Smp_185680.1 Smp_049300.3 0.91 2.14e-06 9.13e-05
Smp_185830.1 Smp_049300.3 0.96 5.81e-09 1.59e-06
Smp_204360.1 Smp_049300.3 0.93 4.45e-07 3.03e-05