Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_048260.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_048260.1 0 -0.22 -2.11 -11.13 -11.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_048260.1 SmLINC00294-IBu 0.87 2.11e-05 4.00e-04
Smp_048260.1 SmLINC00525-IBu -0.82 1.00e-04 2.10e-03
Smp_048260.1 SmLINC01084-IBu -0.82 1.00e-04 2.10e-03
Smp_048260.1 SmLINC01462-IBu 0.81 2.00e-04 2.60e-03
Smp_048260.1 SmLINC01486-IBu 0.80 3.00e-04 3.30e-03
Smp_048260.1 SmLINC03849-IBu 0.94 1.33e-07 1.25e-05
Smp_048260.1 SmLINC05716-IBu 0.85 5.49e-05 9.00e-04
Smp_048260.1 SmLINC05720-IBu 0.81 1.00e-04 2.20e-03
Smp_048260.1 SmLINC06024-IBu -0.81 2.00e-04 2.60e-03
Smp_048260.1 SmLINC06535-IBu 0.81 1.00e-04 2.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01832-IBu 0 0.65 0.07 -2.99 -5.02
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04441-IBu 0 0.43 -0.99 -4.09 -5.39
SmLINC05969-IBu 0 -0.28 -0.93 -11.78 -11.78
Smp_048260.1 0 -0.22 -2.11 -11.13 -11.13
Smp_053760.1 0 0.29 -0.47 -5.24 -5.60
Smp_120960.1 0 -7.03 -0.00 0.79 1.85
Smp_201390.1 0 0.48 -0.11 -6.75 -6.75
Smp_203840.1 0 -0.44 -0.71 -5.88 -3.84
Smp_206250.1 0 -0.30 -1.54 -11.39 -11.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_048260.1 SmLINC01832-IBu 0.90 4.78e-06 1.00e-04
Smp_048260.1 SmLINC03849-IBu 0.94 1.33e-07 1.32e-05
Smp_048260.1 SmLINC04441-IBu 0.92 1.14e-06 5.87e-05
Smp_048260.1 SmLINC05969-IBu 0.93 4.08e-07 2.85e-05
Smp_053760.1 Smp_048260.1 0.90 3.99e-06 1.00e-04
Smp_120960.1 Smp_048260.1 -0.91 1.90e-06 8.41e-05
Smp_048260.1 Smp_201390.1 0.93 4.71e-07 3.15e-05
Smp_048260.1 Smp_203840.1 0.92 1.11e-06 5.74e-05
Smp_048260.1 Smp_206250.1 0.90 4.80e-06 1.00e-04