Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_048160.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
Smp_048160.1 0 0.07 -1.17 -3.73 -4.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_048160.1 SmLINC00026-IBu 0.84 6.50e-05 1.00e-03
Smp_048160.1 SmLINC00294-IBu 0.80 2.00e-04 2.90e-03
Smp_048160.1 SmLINC00554-IBu 0.85 5.38e-05 9.00e-04
Smp_048160.1 SmLINC00556-IBu 0.87 2.15e-05 4.00e-04
Smp_048160.1 SmLINC00893-IBu 0.84 6.50e-05 1.00e-03
Smp_048160.1 SmLINC01084-IBu -0.80 2.00e-04 2.90e-03
Smp_048160.1 SmLINC01429-IBu 0.87 2.31e-05 4.00e-04
Smp_048160.1 SmLINC01431-IBu -0.80 2.00e-04 2.90e-03
Smp_048160.1 SmLINC03111-IBu 0.81 2.00e-04 2.30e-03
Smp_048160.1 SmLINC03116-IBu 0.83 1.00e-04 1.60e-03
Smp_048160.1 SmLINC03443-IBu 0.83 1.00e-04 1.60e-03
Smp_048160.1 SmLINC04129-IBu 0.85 5.80e-05 9.00e-04
Smp_048160.1 SmLINC04144-IBu 0.80 3.00e-04 3.10e-03
Smp_048160.1 SmLINC04271-IBu 0.87 2.26e-05 4.00e-04
Smp_048160.1 SmLINC05274-IBu 0.87 1.75e-05 3.00e-04
Smp_048160.1 SmLINC05840-IBu 0.87 1.64e-05 3.00e-04
Smp_048160.1 SmLINC05887-IBu 0.81 2.00e-04 2.40e-03
Smp_048160.1 SmLINC06024-IBu -0.82 1.00e-04 2.00e-03
Smp_048160.1 SmLINC06138-IBu 0.82 1.00e-04 2.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_048160.1 0 0.07 -1.17 -3.73 -4.0
Smp_176230.2 0 0.48 -0.91 -5.65 -11.3

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_048160.1 Smp_176230.2 0.97 1.62e-09 6.96e-07