Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_047240.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04481-IBu 0 4.43 2.49 6.85 2.74
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC04953-IBu 0 4.15 3.52 7.42 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
Smp_047240.2 0 3.37 3.80 6.07 4.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_047240.2 SmLINC00477-IBu 0.82 1.00e-04 1.70e-03
Smp_047240.2 SmLINC00484-IBu 0.85 4.93e-05 8.00e-04
Smp_047240.2 SmLINC00548-IBu 0.81 2.00e-04 2.60e-03
Smp_047240.2 SmLINC00769-IBu 0.92 1.05e-06 5.33e-05
Smp_047240.2 SmLINC01139-IBu 0.84 6.78e-05 1.00e-03
Smp_047240.2 SmLINC01171-IBu 0.81 2.00e-04 2.50e-03
Smp_047240.2 SmLINC01231-IBu 0.81 2.00e-04 2.40e-03
Smp_047240.2 SmLINC01538-IBu 0.83 1.00e-04 1.40e-03
Smp_047240.2 SmLINC01733-IBu 0.82 1.00e-04 2.00e-03
Smp_047240.2 SmLINC01746-IBu 0.81 1.00e-04 2.30e-03
Smp_047240.2 SmLINC02581-IBu 0.83 1.00e-04 1.40e-03
Smp_047240.2 SmLINC03309-IBu 0.84 7.60e-05 1.10e-03
Smp_047240.2 SmLINC03542-IBu 0.80 3.00e-04 3.40e-03
Smp_047240.2 SmLINC03693-IBu 0.81 2.00e-04 2.40e-03
Smp_047240.2 SmLINC04054-IBu 0.90 3.59e-06 1.00e-04
Smp_047240.2 SmLINC04345-IBu 0.91 1.57e-06 7.10e-05
Smp_047240.2 SmLINC04432-IBu 0.86 3.26e-05 6.00e-04
Smp_047240.2 SmLINC04475-IBu 0.90 3.87e-06 1.00e-04
Smp_047240.2 SmLINC04481-IBu 0.87 2.03e-05 4.00e-04
Smp_047240.2 SmLINC04637-IBu 0.92 6.44e-07 3.76e-05
Smp_047240.2 SmLINC04663-IBu 0.87 2.32e-05 4.00e-04
Smp_047240.2 SmLINC04747-IBu 0.92 1.11e-06 5.55e-05
Smp_047240.2 SmLINC04769-IBu 0.85 4.50e-05 7.00e-04
Smp_047240.2 SmLINC04953-IBu 0.88 1.43e-05 3.00e-04
Smp_047240.2 SmLINC05009-IBu 0.87 1.79e-05 4.00e-04
Smp_047240.2 SmLINC05171-IBu 0.85 4.43e-05 7.00e-04
Smp_047240.2 SmLINC05632-IBu 0.85 5.02e-05 8.00e-04
Smp_047240.2 SmLINC05990-IBu 0.83 1.00e-04 1.40e-03
Smp_047240.2 SmLINC06010-IBu 0.95 2.69e-08 4.18e-06
Smp_047240.2 SmLINC06221-IBu 0.84 8.77e-05 1.20e-03
Smp_047240.2 SmLINC06444-IBu 0.90 3.77e-06 1.00e-04
Smp_047240.2 SmLINC06449-IBu 0.86 2.84e-05 5.00e-04
Smp_047240.2 SmLINC06537-IBu 0.87 1.64e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_047240.2 0 3.37 3.80 6.07 4.36
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_164550.1 0 5.78 6.30 11.08 9.99

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_047240.2 Smp_125200.1 0.92 6.25e-07 3.84e-05
Smp_160360.1 Smp_047240.2 0.91 2.21e-06 9.34e-05
Smp_047240.2 Smp_164550.1 0.90 3.97e-06 1.00e-04