Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_046800.2 Data

Correlation between Smp_046800.2 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_046800.2 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_046800.2 0 -1.01 -9.41 -9.41 -9.41

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_046800.2 SmLINC00282-IBu 0.81 1.00e-04 2.20e-03
Smp_046800.2 SmLINC02038-IBu 0.85 4.65e-05 8.00e-04
Smp_046800.2 SmLINC03769-IBu 0.93 3.33e-07 2.37e-05
Smp_046800.2 SmLINC03848-IBu 0.87 2.46e-05 5.00e-04
Smp_046800.2 SmLINC05284-IBu 0.81 2.00e-04 2.60e-03
Smp_046800.2 SmLINC05989-IBu 0.85 4.21e-05 7.00e-04
Smp_046800.2 SmLINC06890-IBu 0.88 1.44e-05 3.00e-04
Smp_046800.2 SmLINC06903-IBu 0.91 1.25e-06 6.04e-05

Correlation between Smp_046800.2 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_009320.1 0 -0.45 -10.12 -7.98 -10.12
Smp_046800.2 0 -1.01 -9.41 -9.41 -9.41
Smp_165300.1 0 -0.91 -2.66 -11.47 -6.39
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009320.1 Smp_046800.2 0.91 1.27e-06 6.31e-05
Smp_046800.2 Smp_165300.1 0.93 2.49e-07 2.02e-05
Smp_205860.1 Smp_046800.2 0.91 1.24e-06 6.21e-05
Smp_206200.1 Smp_046800.2 0.91 1.43e-06 6.88e-05