Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_046090.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_046090.1 0 -4.19 -6.28 -7.15 -8.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_046090.1 SmLINC02039-IBu 0.85 5.85e-05 9.00e-04
Smp_046090.1 SmLINC02678-IBu 0.81 1.00e-04 2.20e-03
Smp_046090.1 SmLINC06892-IBu 0.94 1.43e-07 1.31e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_046090.1 0 -4.19 -6.28 -7.15 -8.65
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009650.2 Smp_046090.1 0.99 4.68e-13 4.11e-09
Smp_036400.2 Smp_046090.1 0.96 3.00e-09 1.03e-06
Smp_065580.1 Smp_046090.1 0.90 3.42e-06 1.00e-04
Smp_066010.1 Smp_046090.1 0.93 3.36e-07 2.49e-05
Smp_133770.1 Smp_046090.1 0.92 7.73e-07 4.45e-05
Smp_150690.2 Smp_046090.1 0.91 2.42e-06 9.96e-05
Smp_153240.1 Smp_046090.1 0.92 6.22e-07 3.82e-05
Smp_178240.1 Smp_046090.1 0.95 1.83e-08 3.42e-06
Smp_184460.1 Smp_046090.1 0.95 3.60e-08 5.41e-06
Smp_185360.1 Smp_046090.1 0.93 2.90e-07 2.25e-05