Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_043670.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_043670.2 SmLINC04957-IBu 0.85 4.94e-05 8.00e-04
Smp_043670.2 SmLINC06890-IBu 0.95 2.53e-08 4.01e-06
Smp_043670.2 SmLINC06903-IBu 0.87 2.46e-05 5.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00093-IBu 0 -1.11 -3.33 -5.06 -7.16
SmLINC00568-IBu 0 -1.41 -4.15 -10.91 -11.85
SmLINC01675-IBu 0 -0.80 -1.29 -3.92 -5.49
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
Smp_000330.1 0 -3.46 -5.35 -5.35 -5.35
Smp_005880.1 0 -1.71 -5.17 -4.43 -5.19
Smp_007270.2 0 -4.80 -3.78 -12.58 -12.58
Smp_009310.4 0 -2.57 -4.50 -7.03 -8.00
Smp_009650.1 0 -2.22 -4.12 -4.36 -3.86
Smp_010000.1 0 -1.51 -3.27 -4.59 -5.75
Smp_014670.1 0 -1.55 -1.47 -4.90 -6.50
Smp_020550.1 0 -3.71 -4.02 -4.24 -5.10
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45
Smp_034420.1 0 -1.76 -6.68 -4.27 -4.65
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_062720.2 0 -4.51 -3.77 -3.48 -4.71
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_124340.1 0 -2.62 -4.99 -7.42 -3.75
Smp_129610.1 0 -3.45 -4.74 -3.50 -3.64
Smp_137520.1 0 -2.84 -5.66 -3.12 -4.79
Smp_140270.1 0 -2.83 -3.04 -4.31 -3.33
Smp_175190.1 0 -3.40 -5.32 -6.00 -5.17
Smp_178630.1 0 -1.78 -5.50 -9.26 -9.26
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_183020.13 0 -3.91 -2.91 -8.65 -5.43
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_196050.1 0 -3.12 -5.35 -6.02 -6.99
Smp_200320.1 0 -2.27 -7.31 -5.59 -8.81
Smp_205550.1 0 -1.80 -2.45 -3.88 -5.14
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_043670.2 SmLINC00093-IBu 0.94 6.36e-08 7.95e-06
Smp_043670.2 SmLINC00568-IBu 0.93 2.91e-07 2.25e-05
Smp_043670.2 SmLINC01675-IBu 0.91 1.82e-06 8.16e-05
Smp_043670.2 SmLINC06890-IBu 0.95 2.53e-08 4.26e-06
Smp_043670.2 Smp_000330.1 0.92 7.16e-07 4.22e-05
Smp_043670.2 Smp_005880.1 0.91 2.12e-06 9.08e-05
Smp_043670.2 Smp_007270.2 0.93 2.95e-07 2.28e-05
Smp_043670.2 Smp_009310.4 0.97 1.78e-10 1.68e-07
Smp_043670.2 Smp_009650.1 0.92 5.19e-07 3.37e-05
Smp_010000.1 Smp_043670.2 0.92 8.81e-07 4.88e-05
Smp_043670.2 Smp_014670.1 0.93 3.36e-07 2.49e-05
Smp_043670.2 Smp_020550.1 0.96 4.42e-09 1.33e-06
Smp_043670.2 Smp_028990.3 0.92 1.15e-06 5.88e-05
Smp_043670.2 Smp_034420.1 0.93 2.82e-07 2.21e-05
Smp_043670.2 Smp_062720.2 0.97 1.13e-09 5.52e-07
Smp_043670.2 Smp_096020.1 0.95 2.25e-08 3.93e-06
Smp_043670.2 Smp_124340.1 0.97 1.28e-09 5.98e-07
Smp_129610.1 Smp_043670.2 0.91 1.22e-06 6.17e-05
Smp_043670.2 Smp_137520.1 0.95 5.55e-08 7.25e-06
Smp_043670.2 Smp_140270.1 0.97 5.63e-10 3.52e-07
Smp_043670.2 Smp_175190.1 0.92 5.57e-07 3.54e-05
Smp_043670.2 Smp_178630.1 0.94 1.30e-07 1.29e-05
Smp_043670.2 Smp_182890.1 0.96 2.86e-09 1.00e-06
Smp_043670.2 Smp_183020.13 0.96 3.47e-09 1.13e-06
Smp_043670.2 Smp_186130.1 0.95 1.67e-08 3.22e-06
Smp_043670.2 Smp_196050.1 0.93 3.41e-07 2.52e-05
Smp_043670.2 Smp_200320.1 0.93 3.04e-07 2.32e-05
Smp_043670.2 Smp_205550.1 0.96 2.34e-09 8.82e-07
Smp_043670.2 Smp_205860.1 0.93 3.29e-07 2.46e-05
Smp_043670.2 Smp_206200.1 0.90 4.25e-06 1.00e-04