Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_042590.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_042590.2 0 -1.65 -1.31 -11.45 -8.14

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_042590.2 SmLINC02026-IBu 0.84 6.61e-05 1.00e-03
Smp_042590.2 SmLINC06490-IBu 0.83 1.00e-04 1.60e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC07019-IBu 0 -0.56 -0.21 -4.43 -4.44
Smp_042590.2 0 -1.65 -1.31 -11.45 -8.14
Smp_113660.1 0 -1.62 -1.17 -11.97 -11.97
Smp_179530.1 0 -2.12 -1.06 -5.77 -6.14
Smp_181330.1 0 -0.70 -0.19 -8.45 -6.28

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_042590.2 SmLINC07019-IBu 0.94 6.86e-08 8.37e-06
Smp_113660.1 Smp_042590.2 0.91 1.41e-06 6.80e-05
Smp_179530.1 Smp_042590.2 0.93 4.09e-07 2.86e-05
Smp_181330.1 Smp_042590.2 0.91 1.76e-06 7.97e-05