Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_042430.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_042430.1 0 1.11 2.59 4.81 6.21

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_042430.1 SmLINC00001-IBu 0.88 1.11e-05 2.00e-04
Smp_042430.1 SmLINC00004-IBu 0.90 3.32e-06 1.00e-04
Smp_042430.1 SmLINC00007-IBu 0.81 1.00e-04 2.20e-03
Smp_042430.1 SmLINC00266-IBu 0.83 1.00e-04 1.40e-03
Smp_042430.1 SmLINC00525-IBu 0.85 5.17e-05 8.00e-04
Smp_042430.1 SmLINC01084-IBu 0.83 9.42e-05 1.30e-03
Smp_042430.1 SmLINC01431-IBu 0.81 1.00e-04 2.30e-03
Smp_042430.1 SmLINC01520-IBu 0.88 9.66e-06 2.00e-04
Smp_042430.1 SmLINC02029-IBu 0.87 1.97e-05 4.00e-04
Smp_042430.1 SmLINC02084-IBu 0.81 2.00e-04 2.30e-03
Smp_042430.1 SmLINC02255-IBu -0.84 6.65e-05 1.00e-03
Smp_042430.1 SmLINC02376-IBu 0.82 1.00e-04 1.70e-03
Smp_042430.1 SmLINC02394-IBu 0.81 2.00e-04 2.70e-03
Smp_042430.1 SmLINC02539-IBu 0.89 6.22e-06 1.00e-04
Smp_042430.1 SmLINC02540-IBu 0.84 7.67e-05 1.10e-03
Smp_042430.1 SmLINC02545-IBu 0.88 1.34e-05 3.00e-04
Smp_042430.1 SmLINC02577-IBu 0.88 1.34e-05 3.00e-04
Smp_042430.1 SmLINC02657-IBu -0.86 3.63e-05 6.00e-04
Smp_042430.1 SmLINC02783-IBu 0.83 9.23e-05 1.30e-03
Smp_042430.1 SmLINC02786-IBu 0.80 2.00e-04 2.90e-03
Smp_042430.1 SmLINC03326-IBu 0.81 1.00e-04 2.20e-03
Smp_042430.1 SmLINC03658-IBu 0.81 2.00e-04 2.30e-03
Smp_042430.1 SmLINC03849-IBu -0.82 1.00e-04 2.10e-03
Smp_042430.1 SmLINC03927-IBu 0.86 2.67e-05 5.00e-04
Smp_042430.1 SmLINC04235-IBu 0.87 1.96e-05 4.00e-04
Smp_042430.1 SmLINC04421-IBu 0.90 3.68e-06 1.00e-04
Smp_042430.1 SmLINC04423-IBu 0.82 1.00e-04 2.10e-03
Smp_042430.1 SmLINC04896-IBu 0.83 9.00e-05 1.30e-03
Smp_042430.1 SmLINC05289-IBu 0.85 4.46e-05 7.00e-04
Smp_042430.1 SmLINC05404-IBu 0.86 3.32e-05 6.00e-04
Smp_042430.1 SmLINC05604-IBu 0.92 8.58e-07 4.60e-05
Smp_042430.1 SmLINC05684-IBu 0.85 4.90e-05 8.00e-04
Smp_042430.1 SmLINC06024-IBu 0.84 8.28e-05 1.20e-03
Smp_042430.1 SmLINC06415-IBu 0.87 1.86e-05 4.00e-04
Smp_042430.1 SmLINC06535-IBu -0.80 2.00e-04 2.80e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_042430.1 0 1.11 2.59 4.81 6.21
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_042430.1 Smp_037720.1 0.91 2.24e-06 9.43e-05
Smp_042430.1 Smp_052280.2 0.90 2.70e-06 1.00e-04
Smp_042430.1 Smp_137810.1 0.91 2.31e-06 9.65e-05
Smp_042430.1 Smp_140720.1 0.92 5.54e-07 3.53e-05
Smp_042430.1 Smp_155570.1 0.90 3.57e-06 1.00e-04
Smp_042430.1 Smp_192780.1 0.90 3.00e-06 1.00e-04
Smp_042430.1 Smp_203030.1 0.90 4.60e-06 1.00e-04