Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_042400.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_042400.1 0 -0.94 1.58 3.75 4.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_042400.1 SmLINC00001-IBu 0.92 6.35e-07 3.72e-05
Smp_042400.1 SmLINC00004-IBu 0.91 1.58e-06 7.12e-05
Smp_042400.1 SmLINC00282-IBu -0.80 3.00e-04 3.20e-03
Smp_042400.1 SmLINC00294-IBu -0.81 1.00e-04 2.20e-03
Smp_042400.1 SmLINC00369-IBu 0.81 2.00e-04 2.50e-03
Smp_042400.1 SmLINC00525-IBu 0.82 1.00e-04 1.80e-03
Smp_042400.1 SmLINC00556-IBu -0.84 7.14e-05 1.10e-03
Smp_042400.1 SmLINC01084-IBu 0.85 5.06e-05 8.00e-04
Smp_042400.1 SmLINC01431-IBu 0.84 7.25e-05 1.10e-03
Smp_042400.1 SmLINC01432-IBu 0.86 3.47e-05 6.00e-04
Smp_042400.1 SmLINC01520-IBu 0.82 1.00e-04 1.90e-03
Smp_042400.1 SmLINC01637-IBu -0.80 3.00e-04 3.30e-03
Smp_042400.1 SmLINC02029-IBu 0.80 2.00e-04 2.90e-03
Smp_042400.1 SmLINC02084-IBu 0.80 3.00e-04 3.20e-03
Smp_042400.1 SmLINC02255-IBu -0.90 4.07e-06 1.00e-04
Smp_042400.1 SmLINC02376-IBu 0.88 1.13e-05 2.00e-04
Smp_042400.1 SmLINC02394-IBu 0.86 3.80e-05 6.00e-04
Smp_042400.1 SmLINC02539-IBu 0.84 6.25e-05 1.00e-03
Smp_042400.1 SmLINC02577-IBu 0.83 1.00e-04 1.40e-03
Smp_042400.1 SmLINC02630-IBu -0.87 2.20e-05 4.00e-04
Smp_042400.1 SmLINC02657-IBu -0.85 4.15e-05 7.00e-04
Smp_042400.1 SmLINC03326-IBu 0.83 1.00e-04 1.60e-03
Smp_042400.1 SmLINC03658-IBu 0.81 1.00e-04 2.10e-03
Smp_042400.1 SmLINC03849-IBu -0.86 3.48e-05 6.00e-04
Smp_042400.1 SmLINC04235-IBu 0.88 1.17e-05 2.00e-04
Smp_042400.1 SmLINC04421-IBu 0.90 3.26e-06 1.00e-04
Smp_042400.1 SmLINC04423-IBu 0.88 1.45e-05 3.00e-04
Smp_042400.1 SmLINC05274-IBu -0.84 8.16e-05 1.20e-03
Smp_042400.1 SmLINC05284-IBu -0.87 2.42e-05 5.00e-04
Smp_042400.1 SmLINC05289-IBu 0.88 1.14e-05 2.00e-04
Smp_042400.1 SmLINC05604-IBu 0.90 3.10e-06 1.00e-04
Smp_042400.1 SmLINC05684-IBu 0.81 2.00e-04 2.70e-03
Smp_042400.1 SmLINC05720-IBu -0.80 2.00e-04 3.00e-03
Smp_042400.1 SmLINC06024-IBu 0.86 2.74e-05 5.00e-04
Smp_042400.1 SmLINC06145-IBu 0.82 1.00e-04 1.80e-03
Smp_042400.1 SmLINC06239-IBu 0.83 8.95e-05 1.30e-03
Smp_042400.1 SmLINC06535-IBu -0.87 2.41e-05 5.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_042400.1 0 -0.94 1.58 3.75 4.94
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_042400.1 Smp_024180.1 0.92 8.53e-07 4.77e-05
Smp_042400.1 Smp_024180.2 0.93 3.03e-07 2.32e-05
Smp_042400.1 Smp_028870.1 0.90 4.20e-06 1.00e-04
Smp_033260.1 Smp_042400.1 0.91 1.22e-06 6.14e-05
Smp_050350.3 Smp_042400.1 0.93 2.73e-07 2.16e-05
Smp_042400.1 Smp_052280.2 0.93 2.19e-07 1.85e-05
Smp_042400.1 Smp_094050.1 0.91 1.89e-06 8.36e-05
Smp_042400.1 Smp_155570.1 0.92 1.09e-06 5.70e-05
Smp_042400.1 Smp_156930.1 0.91 2.34e-06 9.73e-05
Smp_042400.1 Smp_159650.1 0.90 2.59e-06 1.00e-04
Smp_042400.1 Smp_201910.1 0.92 9.81e-07 5.26e-05
Smp_042400.1 Smp_202610.1 0.91 2.48e-06 1.00e-04
Smp_042400.1 Smp_203030.1 0.90 2.79e-06 1.00e-04