Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_042270.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_042270.1 0 -6.69 -4.66 -8.17 -6.53

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_042270.1 SmLINC02039-IBu 0.80 2.00e-04 2.80e-03
Smp_042270.1 SmLINC06892-IBu 0.93 1.99e-07 1.65e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_042270.1 0 -6.69 -4.66 -8.17 -6.53
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_042270.1 Smp_009650.2 0.99 1.33e-13 1.93e-09
Smp_036400.2 Smp_042270.1 0.94 9.27e-08 1.02e-05
Smp_042270.1 Smp_066010.1 0.92 6.45e-07 3.92e-05
Smp_042270.1 Smp_178240.1 0.92 7.00e-07 4.15e-05
Smp_042270.1 Smp_184460.1 0.91 1.37e-06 6.68e-05