Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_042090.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
Smp_042090.3 0 0.00 11.29 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_042090.3 SmLINC02026-IBu 0.85 3.93e-05 7.00e-04
Smp_042090.3 SmLINC04430-IBu 0.95 3.51e-08 5.01e-06
Smp_042090.3 SmLINC05559-IBu 0.85 5.47e-05 9.00e-04
Smp_042090.3 SmLINC06700-IBu 0.84 8.50e-05 1.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00192-IBu 0 0.61 2.35 -8.28 -4.07
SmLINC01824-IBu 0 0.00 5.41 4.53 2.63
SmLINC03924-IBu 0 0.69 2.22 -1.76 -2.59
SmLINC04077-IBu 0 1.23 3.96 -1.93 -1.93
SmLINC04219-IBu 0 -1.93 4.04 -1.93 -1.93
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05301-IBu 0 3.47 8.11 4.71 0.61
SmLINC06818-IBu 0 -0.47 6.07 -3.17 -3.17
SmLINC07017-IBu 0 2.51 4.73 -1.06 -1.03
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_017020.1 0 0.08 0.95 -6.58 -6.58
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_055420.1 0 -4.89 5.31 -4.89 -4.89
Smp_059170.1 0 0.39 6.13 4.57 -4.44
Smp_062420.1 0 1.52 4.05 -0.25 -0.83
Smp_062420.4 0 -0.89 2.10 -11.39 -11.39
Smp_076650.1 0 0.65 2.86 -0.34 -4.53
Smp_078010.1 0 -2.61 3.58 -0.01 -6.74
Smp_084940.1 0 -2.11 1.80 -3.80 -4.78
Smp_085110.3 0 8.59 12.67 0.00 0.00
Smp_093790.1 0 2.46 6.22 -0.90 5.51
Smp_134100.1 0 0.70 4.69 0.40 -0.45
Smp_138070.1 0 2.41 6.98 -1.44 3.23
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_159800.1 0 0.00 6.34 0.00 0.00
Smp_169680.1 0 3.42 6.47 5.96 4.77
Smp_189380.1 0 1.72 6.15 2.10 5.31
Smp_189980.1 0 1.62 9.93 -1.10 -1.10
Smp_200830.1 0 0.51 2.30 -3.02 -5.44
Smp_202120.1 0 -0.66 7.33 6.40 5.50
Smp_205590.1 0 0.00 6.18 0.00 0.00
Smp_206270.1 0 1.06 4.27 1.21 -0.69

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_042090.3 SmLINC00192-IBu 0.93 4.68e-07 3.13e-05
Smp_042090.3 SmLINC01824-IBu 0.90 3.79e-06 1.00e-04
Smp_042090.3 SmLINC03924-IBu 0.91 2.14e-06 9.12e-05
Smp_042090.3 SmLINC04077-IBu 0.99 2.44e-13 2.78e-09
Smp_042090.3 SmLINC04219-IBu 0.95 3.48e-08 5.29e-06
Smp_042090.3 SmLINC04430-IBu 0.95 3.51e-08 5.32e-06
Smp_042090.3 SmLINC05301-IBu 0.91 1.54e-06 7.25e-05
Smp_042090.3 SmLINC06818-IBu 0.99 3.03e-15 1.86e-10
Smp_042090.3 SmLINC07017-IBu 0.93 2.54e-07 2.05e-05
Smp_042090.3 Smp_010140.2 0.95 4.66e-08 6.44e-06
Smp_042090.3 Smp_017020.1 0.93 2.57e-07 2.07e-05
Smp_042090.3 Smp_055420.1 0.90 3.41e-06 1.00e-04
Smp_042090.3 Smp_059170.1 0.95 2.72e-08 4.47e-06
Smp_042090.3 Smp_062420.1 0.94 1.72e-07 1.57e-05
Smp_042090.3 Smp_062420.4 0.92 5.30e-07 3.42e-05
Smp_042090.3 Smp_076650.1 0.98 1.91e-11 4.11e-08
Smp_042090.3 Smp_078010.1 0.95 1.70e-08 3.25e-06
Smp_042090.3 Smp_084940.1 0.97 1.89e-09 7.67e-07
Smp_042090.3 Smp_085110.3 0.97 5.56e-10 3.49e-07
Smp_042090.3 Smp_093790.1 0.92 1.10e-06 5.72e-05
Smp_042090.3 Smp_134100.1 0.91 1.95e-06 8.56e-05
Smp_042090.3 Smp_138070.1 0.93 2.46e-07 2.01e-05
Smp_042090.3 Smp_138080.1 0.90 2.98e-06 1.00e-04
Smp_042090.3 Smp_159800.1 0.94 1.15e-07 1.19e-05
Smp_042090.3 Smp_169680.1 0.93 3.28e-07 2.45e-05
Smp_042090.3 Smp_189380.1 0.90 4.12e-06 1.00e-04
Smp_042090.3 Smp_189980.1 0.97 3.14e-10 2.43e-07
Smp_042090.3 Smp_200830.1 0.93 4.86e-07 3.22e-05
Smp_042090.3 Smp_202120.1 0.91 1.82e-06 8.14e-05
Smp_042090.3 Smp_205590.1 0.90 4.81e-06 1.00e-04
Smp_042090.3 Smp_206270.1 0.97 2.27e-10 1.97e-07