Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_041730.3 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_041730.3 0 -1.60 -3.22 -4.30 -5.22

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_041730.3 SmLINC06543-IBu -0.68 5.00e-03 2.09e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_041730.3 0 -1.60 -3.22 -4.30 -5.22

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_041730.3 SmLINC00554-IBu 0.82 1.00e-04 2.10e-03
Smp_041730.3 SmLINC00556-IBu 0.84 7.50e-05 1.10e-03
Smp_041730.3 SmLINC02255-IBu 0.82 1.00e-04 1.80e-03
Smp_041730.3 SmLINC02888-IBu 0.93 2.26e-07 1.80e-05
Smp_041730.3 SmLINC05274-IBu 0.87 1.86e-05 4.00e-04
Smp_041730.3 SmLINC06128-IBu 0.86 3.24e-05 6.00e-04
Smp_041730.3 SmLINC06903-IBu 0.83 9.05e-05 1.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_041730.3 0 -1.60 -3.22 -4.30 -5.22

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_041730.3 Smp_035090.2 0.91 1.53e-06 7.20e-05