Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_040970.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
Smp_040970.3 0 11.70 13.01 5.20 8.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_040970.3 SmLINC02646-IBu 0.86 2.72e-05 5.00e-04
Smp_040970.3 SmLINC06646-IBu 0.81 1.00e-04 2.20e-03
Smp_040970.3 SmLINC06700-IBu 0.89 6.54e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00513-IBu 0 6.74 8.35 0.00 3.11
SmLINC02981-IBu 0 5.05 5.74 0.00 0.00
SmLINC04218-IBu 0 5.51 7.26 3.47 3.11
SmLINC07012-IBu 0 4.23 5.09 -1.27 -4.32
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_024820.1 0 4.10 4.75 1.46 1.82
Smp_029240.1 0 3.97 4.74 2.59 1.22
Smp_032320.2 0 -0.17 0.68 -9.42 -9.42
Smp_032740.1 0 2.87 3.50 0.35 -1.77
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_051360.2 0 3.49 5.41 -6.23 -6.23
Smp_091190.1 0 2.07 2.52 -8.48 -3.36
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_112520.1 0 1.59 3.68 -6.44 -6.44
Smp_138140.1 0 2.02 2.69 -3.31 -2.76
Smp_140130.1 0 1.66 2.18 -1.05 -2.58
Smp_154170.1 0 1.83 3.24 -0.15 -1.26
Smp_155170.1 0 2.84 3.14 -1.92 0.05
Smp_171420.1 0 2.93 4.14 1.74 -0.67
Smp_174750.1 0 1.35 2.65 -1.87 -1.39
Smp_190900.1 0 0.50 -0.24 -3.60 -3.79
Smp_200810.1 0 1.79 3.97 -0.86 -1.95
Smp_204000.1 0 4.82 5.19 1.55 0.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_040970.3 SmLINC00513-IBu 0.91 1.52e-06 7.17e-05
Smp_040970.3 SmLINC02981-IBu 0.96 9.18e-09 2.15e-06
Smp_040970.3 SmLINC04218-IBu 0.92 9.81e-07 5.26e-05
Smp_040970.3 SmLINC07012-IBu 0.96 1.18e-08 2.55e-06
Smp_040970.3 Smp_021340.3 0.91 1.72e-06 7.82e-05
Smp_024820.1 Smp_040970.3 0.92 8.26e-07 4.66e-05
Smp_029240.1 Smp_040970.3 0.91 1.30e-06 6.44e-05
Smp_040970.3 Smp_032320.2 0.94 1.48e-07 1.41e-05
Smp_040970.3 Smp_032740.1 0.90 2.52e-06 1.00e-04
Smp_040970.3 Smp_033950.3 0.91 2.07e-06 8.91e-05
Smp_051360.2 Smp_040970.3 0.95 4.82e-08 6.59e-06
Smp_091190.1 Smp_040970.3 0.92 9.87e-07 5.28e-05
Smp_040970.3 Smp_098370.1 0.91 1.36e-06 6.63e-05
Smp_040970.3 Smp_099160.4 0.94 1.15e-07 1.19e-05
Smp_040970.3 Smp_112520.1 0.90 2.69e-06 1.00e-04
Smp_138140.1 Smp_040970.3 0.92 7.09e-07 4.19e-05
Smp_140130.1 Smp_040970.3 0.90 4.22e-06 1.00e-04
Smp_040970.3 Smp_154170.1 0.90 3.02e-06 1.00e-04
Smp_040970.3 Smp_155170.1 0.92 1.00e-06 5.36e-05
Smp_040970.3 Smp_171420.1 0.95 4.02e-08 5.83e-06
Smp_174750.1 Smp_040970.3 0.90 4.82e-06 1.00e-04
Smp_040970.3 Smp_190900.1 0.92 9.15e-07 5.01e-05
Smp_040970.3 Smp_200810.1 0.95 3.96e-08 5.77e-06
Smp_040970.3 Smp_204000.1 0.90 3.25e-06 1.00e-04