Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_040720.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
Smp_040720.3 0 8.84 10.93 11.66 10.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_040720.3 SmLINC05632-IBu 0.96 4.82e-09 1.31e-06
Smp_040720.3 SmLINC05870-IBu 0.88 1.45e-05 3.00e-04
Smp_040720.3 SmLINC05990-IBu 0.84 7.69e-05 1.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05545-IBu 0 3.35 4.91 7.54 6.40
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
Smp_034030.1 0 3.37 4.72 5.69 5.61
Smp_040720.3 0 8.84 10.93 11.66 10.78
Smp_052990.1 0 -0.52 2.98 4.39 4.07
Smp_055640.1 0 1.44 3.41 4.52 4.57
Smp_068510.1 0 0.65 2.92 5.59 4.35
Smp_070380.1 0 2.49 3.20 5.35 4.60
Smp_075280.2 0 0.78 3.30 4.94 4.11
Smp_077720.1 0 2.95 5.46 6.14 5.37
Smp_077850.1 0 1.75 4.77 5.81 4.20
Smp_131600.1 0 1.35 6.02 6.04 5.18
Smp_139280.1 0 4.38 5.26 6.40 5.71
Smp_140860.1 0 0.37 2.98 4.66 3.61
Smp_142080.1 0 1.40 2.62 4.98 4.98
Smp_146720.1 0 0.62 4.79 4.89 4.19
Smp_158880.1 0 1.21 5.25 6.12 5.41
Smp_160000.2 0 6.42 8.33 8.49 8.70
Smp_164670.1 0 2.08 3.82 5.29 4.83
Smp_176430.2 0 9.09 10.43 10.57 10.62
Smp_203390.1 0 1.08 3.39 4.79 4.84

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_040720.3 SmLINC05545-IBu 0.93 5.08e-07 3.32e-05
Smp_040720.3 SmLINC05632-IBu 0.96 4.82e-09 1.41e-06
Smp_040720.3 Smp_034030.1 0.93 3.77e-07 2.70e-05
Smp_040720.3 Smp_052990.1 0.90 4.32e-06 1.00e-04
Smp_055640.1 Smp_040720.3 0.93 2.77e-07 2.18e-05
Smp_068510.1 Smp_040720.3 0.90 4.70e-06 1.00e-04
Smp_040720.3 Smp_070380.1 0.90 3.43e-06 1.00e-04
Smp_040720.3 Smp_075280.2 0.90 3.23e-06 1.00e-04
Smp_040720.3 Smp_077720.1 0.97 1.75e-09 7.30e-07
Smp_040720.3 Smp_077850.1 0.91 1.34e-06 6.56e-05
Smp_131600.1 Smp_040720.3 0.90 4.19e-06 1.00e-04
Smp_139280.1 Smp_040720.3 0.91 1.99e-06 8.68e-05
Smp_040720.3 Smp_140860.1 0.93 2.64e-07 2.11e-05
Smp_142080.1 Smp_040720.3 0.91 2.43e-06 1.00e-04
Smp_040720.3 Smp_146720.1 0.91 1.91e-06 8.44e-05
Smp_040720.3 Smp_158880.1 0.90 4.24e-06 1.00e-04
Smp_040720.3 Smp_160000.2 0.91 1.34e-06 6.56e-05
Smp_164670.1 Smp_040720.3 0.90 2.61e-06 1.00e-04
Smp_176430.2 Smp_040720.3 0.92 5.58e-07 3.55e-05
Smp_040720.3 Smp_203390.1 0.90 2.55e-06 1.00e-04