Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_040720.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
Smp_040720.2 0 -1.43 -10.86 0.38 -0.49

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_040720.2 SmLINC00477-IBu 0.82 1.00e-04 1.80e-03
Smp_040720.2 SmLINC00484-IBu 0.81 2.00e-04 2.70e-03
Smp_040720.2 SmLINC01139-IBu 0.80 3.00e-04 3.20e-03
Smp_040720.2 SmLINC03542-IBu 0.84 8.73e-05 1.20e-03
Smp_040720.2 SmLINC04663-IBu 0.82 1.00e-04 1.80e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_040720.2 0 -1.43 -10.86 0.38 -0.49
Smp_201210.1 0 -1.36 -3.42 2.11 0.93

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_040720.2 Smp_201210.1 0.9 2.99e-06 1.00e-04