Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_039600.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
Smp_039600.1 0 -0.36 -1.72 -1.83 2.66

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_039600.1 SmLINC00007-IBu 0.83 1.00e-04 1.40e-03
Smp_039600.1 SmLINC01520-IBu 0.83 1.00e-04 1.60e-03
Smp_039600.1 SmLINC02029-IBu 0.84 8.00e-05 1.20e-03
Smp_039600.1 SmLINC02577-IBu 0.81 2.00e-04 2.40e-03
Smp_039600.1 SmLINC02776-IBu 0.85 4.37e-05 7.00e-04
Smp_039600.1 SmLINC02783-IBu 0.84 6.84e-05 1.00e-03
Smp_039600.1 SmLINC02786-IBu 0.91 1.71e-06 7.52e-05
Smp_039600.1 SmLINC04237-IBu 0.84 7.85e-05 1.10e-03
Smp_039600.1 SmLINC04627-IBu 0.81 2.00e-04 2.30e-03
Smp_039600.1 SmLINC05404-IBu 0.83 1.00e-04 1.50e-03
Smp_039600.1 SmLINC05684-IBu 0.87 2.36e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_039600.1 0 -0.36 -1.72 -1.83 2.66
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_126340.1 0 0.00 2.97 7.05 12.21

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_041540.1 Smp_039600.1 0.90 3.26e-06 1.00e-04
Smp_039600.1 Smp_070540.1 0.90 3.96e-06 1.00e-04
Smp_039600.1 Smp_105450.1 0.90 3.09e-06 1.00e-04
Smp_126340.1 Smp_039600.1 0.91 1.92e-06 8.48e-05