Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_038980.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04693-IBu 0 7.21 3.85 4.35 6.49
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06667-IBu 0 5.49 2.05 4.25 3.56
Smp_038980.2 0 0.92 -0.55 -2.44 -4.61

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_038980.2 SmLINC00787-IBu 0.89 5.36e-06 1.00e-04
Smp_038980.2 SmLINC01230-IBu 0.89 8.10e-06 2.00e-04
Smp_038980.2 SmLINC01429-IBu 0.94 9.06e-08 9.58e-06
Smp_038980.2 SmLINC01979-IBu 0.95 3.37e-08 4.87e-06
Smp_038980.2 SmLINC02646-IBu 0.80 2.00e-04 2.90e-03
Smp_038980.2 SmLINC03111-IBu 0.94 1.82e-07 1.55e-05
Smp_038980.2 SmLINC03116-IBu 0.93 3.77e-07 2.58e-05
Smp_038980.2 SmLINC03443-IBu 0.83 9.42e-05 1.30e-03
Smp_038980.2 SmLINC04074-IBu 0.80 3.00e-04 3.30e-03
Smp_038980.2 SmLINC04144-IBu 0.85 4.01e-05 7.00e-04
Smp_038980.2 SmLINC04693-IBu 0.83 1.00e-04 1.40e-03
Smp_038980.2 SmLINC06436-IBu 0.84 8.58e-05 1.20e-03
Smp_038980.2 SmLINC06646-IBu 0.86 2.82e-05 5.00e-04
Smp_038980.2 SmLINC06667-IBu 0.80 3.00e-04 3.30e-03