Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_038410.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_038410.1 0 2.96 4.19 7.00 7.80

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_038410.1 SmLINC00001-IBu 0.88 1.42e-05 3.00e-04
Smp_038410.1 SmLINC00004-IBu 0.87 1.91e-05 4.00e-04
Smp_038410.1 SmLINC00037-IBu -0.81 2.00e-04 2.60e-03
Smp_038410.1 SmLINC00266-IBu 0.85 4.62e-05 8.00e-04
Smp_038410.1 SmLINC00282-IBu -0.82 1.00e-04 1.70e-03
Smp_038410.1 SmLINC00294-IBu -0.80 2.00e-04 2.90e-03
Smp_038410.1 SmLINC00369-IBu 0.89 5.35e-06 1.00e-04
Smp_038410.1 SmLINC00376-IBu 0.86 3.40e-05 6.00e-04
Smp_038410.1 SmLINC00525-IBu 0.82 1.00e-04 2.00e-03
Smp_038410.1 SmLINC01084-IBu 0.88 1.45e-05 3.00e-04
Smp_038410.1 SmLINC01122-IBu 0.82 1.00e-04 2.10e-03
Smp_038410.1 SmLINC01431-IBu 0.90 3.53e-06 1.00e-04
Smp_038410.1 SmLINC01432-IBu 0.81 2.00e-04 2.60e-03
Smp_038410.1 SmLINC01569-IBu 0.80 2.00e-04 2.90e-03
Smp_038410.1 SmLINC01637-IBu -0.84 7.72e-05 1.10e-03
Smp_038410.1 SmLINC01733-IBu 0.83 1.00e-04 1.60e-03
Smp_038410.1 SmLINC02084-IBu 0.90 3.55e-06 1.00e-04
Smp_038410.1 SmLINC02255-IBu -0.94 8.74e-08 9.35e-06
Smp_038410.1 SmLINC02394-IBu 0.87 2.31e-05 4.00e-04
Smp_038410.1 SmLINC02539-IBu 0.82 1.00e-04 1.80e-03
Smp_038410.1 SmLINC02540-IBu 0.80 3.00e-04 3.20e-03
Smp_038410.1 SmLINC02546-IBu 0.85 5.94e-05 9.00e-04
Smp_038410.1 SmLINC02630-IBu -0.94 6.13e-08 7.33e-06
Smp_038410.1 SmLINC02657-IBu -0.89 7.28e-06 2.00e-04
Smp_038410.1 SmLINC03108-IBu 0.82 1.00e-04 1.80e-03
Smp_038410.1 SmLINC03326-IBu 0.82 1.00e-04 2.10e-03
Smp_038410.1 SmLINC03693-IBu 0.81 1.00e-04 2.20e-03
Smp_038410.1 SmLINC03849-IBu -0.83 1.00e-04 1.50e-03
Smp_038410.1 SmLINC03927-IBu 0.84 8.13e-05 1.20e-03
Smp_038410.1 SmLINC03930-IBu -0.83 1.00e-04 1.50e-03
Smp_038410.1 SmLINC04421-IBu 0.89 7.36e-06 2.00e-04
Smp_038410.1 SmLINC04423-IBu 0.81 2.00e-04 2.60e-03
Smp_038410.1 SmLINC04521-IBu 0.82 1.00e-04 1.90e-03
Smp_038410.1 SmLINC04684-IBu 0.81 1.00e-04 2.30e-03
Smp_038410.1 SmLINC05147-IBu 0.83 1.00e-04 1.60e-03
Smp_038410.1 SmLINC05258-IBu 0.81 2.00e-04 2.40e-03
Smp_038410.1 SmLINC05274-IBu -0.81 1.00e-04 2.30e-03
Smp_038410.1 SmLINC05284-IBu -0.89 5.20e-06 1.00e-04
Smp_038410.1 SmLINC05289-IBu 0.86 3.08e-05 6.00e-04
Smp_038410.1 SmLINC05604-IBu 0.85 5.57e-05 9.00e-04
Smp_038410.1 SmLINC05720-IBu -0.81 1.00e-04 2.30e-03
Smp_038410.1 SmLINC06024-IBu 0.83 1.00e-04 1.50e-03
Smp_038410.1 SmLINC06128-IBu -0.82 1.00e-04 1.70e-03
Smp_038410.1 SmLINC06221-IBu 0.82 1.00e-04 2.00e-03
Smp_038410.1 SmLINC06535-IBu -0.91 1.43e-06 6.61e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038410.1 0 2.96 4.19 7.00 7.80
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_160090.2 0 9.28 9.75 11.69 12.26
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_194860.1 0 3.09 7.72 14.07 14.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033260.1 Smp_038410.1 0.90 3.58e-06 1.00e-04
Smp_050350.3 Smp_038410.1 0.92 1.05e-06 5.55e-05
Smp_038410.1 Smp_052280.2 0.92 1.06e-06 5.56e-05
Smp_038410.1 Smp_055340.2 0.96 6.20e-09 1.66e-06
Smp_056460.1 Smp_038410.1 0.91 2.27e-06 9.52e-05
Smp_038410.1 Smp_079420.1 0.90 2.57e-06 1.00e-04
Smp_038410.1 Smp_137000.2 0.90 3.25e-06 1.00e-04
Smp_160090.2 Smp_038410.1 0.91 2.04e-06 8.83e-05
Smp_038410.1 Smp_160230.1 -0.90 3.16e-06 1.00e-04
Smp_169670.1 Smp_038410.1 0.93 5.01e-07 3.29e-05
Smp_194860.1 Smp_038410.1 0.90 3.63e-06 1.00e-04