Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_037610.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_037610.1 0 1.63 1.24 -3.86 -4.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_037610.1 SmLINC01316-IBu 0.80 2.00e-04 2.70e-03
Smp_037610.1 SmLINC01429-IBu 0.89 5.60e-06 1.00e-04
Smp_037610.1 SmLINC01979-IBu 0.94 1.42e-07 1.31e-05
Smp_037610.1 SmLINC02646-IBu 0.89 6.06e-06 1.00e-04
Smp_037610.1 SmLINC03111-IBu 0.89 5.38e-06 1.00e-04
Smp_037610.1 SmLINC03116-IBu 0.84 6.14e-05 9.00e-04
Smp_037610.1 SmLINC03443-IBu 0.82 1.00e-04 1.80e-03
Smp_037610.1 SmLINC04074-IBu 0.87 1.59e-05 3.00e-04
Smp_037610.1 SmLINC06646-IBu 0.97 5.01e-10 3.01e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024140.1 0 0.15 -0.05 -5.68 -10.99
Smp_037610.1 0 1.63 1.24 -3.86 -4.68
Smp_059340.3 0 0.76 1.23 -11.82 -11.82

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_037610.1 Smp_024140.1 0.93 3.06e-07 2.34e-05
Smp_037610.1 Smp_059340.3 0.92 1.18e-06 5.99e-05