Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_037020.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_037020.1 0 -2.12 -8.24 -8.43 -8.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_037020.1 SmLINC02039-IBu 0.83 1.00e-04 1.40e-03
Smp_037020.1 SmLINC06892-IBu 0.88 1.20e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_033000.1 0 -1.72 -11.37 -13.15 -11.62
Smp_035270.1 0 -9.88 -14.08 -13.91 -7.32
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_037020.1 0 -2.12 -8.24 -8.43 -8.13
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_165180.1 0 -1.47 -9.43 -12.79 -7.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033000.1 Smp_037020.1 0.97 9.81e-10 5.03e-07
Smp_035270.1 Smp_037020.1 0.91 2.32e-06 9.68e-05
Smp_036400.2 Smp_037020.1 0.92 1.17e-06 5.98e-05
Smp_083180.1 Smp_037020.1 0.92 7.87e-07 4.51e-05
Smp_037020.1 Smp_085290.3 0.90 4.16e-06 1.00e-04
Smp_106390.1 Smp_037020.1 0.94 9.87e-08 1.07e-05
Smp_145810.2 Smp_037020.1 0.92 1.00e-06 5.37e-05
Smp_150690.2 Smp_037020.1 0.96 4.27e-09 1.30e-06
Smp_037020.1 Smp_165180.1 0.96 8.77e-09 2.09e-06