Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_036470.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_036470.1 0 -1.93 1.42 -1.69 -3.55

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036470.1 SmLINC00372-IBu 0.90 3.46e-06 1.00e-04
Smp_036470.1 SmLINC02026-IBu 0.81 1.00e-04 2.20e-03
Smp_036470.1 SmLINC04430-IBu 0.94 9.34e-08 9.78e-06
Smp_036470.1 SmLINC04947-IBu 0.89 7.33e-06 2.00e-04
Smp_036470.1 SmLINC05559-IBu 0.94 1.07e-07 1.08e-05
Smp_036470.1 SmLINC06836-IBu 0.89 5.38e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_036470.1 0 -1.93 1.42 -1.69 -3.55
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_194060.1 0 0.19 1.68 -10.58 -10.66

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_036470.1 0.95 3.17e-08 4.96e-06
Smp_138080.1 Smp_036470.1 0.98 2.91e-12 1.28e-08
Smp_159070.3 Smp_036470.1 0.92 1.09e-06 5.67e-05
Smp_194060.1 Smp_036470.1 0.90 3.32e-06 1.00e-04