Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_036400.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036400.2 SmLINC02039-IBu 0.84 7.09e-05 1.10e-03
Smp_036400.2 SmLINC06892-IBu 0.96 1.04e-08 2.19e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_009390.1 0 -2.49 -4.72 -3.30 -3.76
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_037020.1 0 -2.12 -8.24 -8.43 -8.13
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_042270.1 0 -6.69 -4.66 -8.17 -6.53
Smp_046090.1 0 -4.19 -6.28 -7.15 -8.65
Smp_059930.1 0 -3.75 -7.72 -3.31 -3.23
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_113710.1 0 -3.35 -5.78 -3.90 -2.82
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_148800.1 0 -3.26 -5.77 -5.61 -4.70
Smp_149190.1 0 -3.08 -5.94 -9.47 -9.18
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_165180.1 0 -1.47 -9.43 -12.79 -7.00
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_186610.1 0 -3.09 -6.92 -6.26 -7.07
Smp_190390.1 0 -1.86 -3.88 -4.81 -6.59
Smp_190590.1 0 -2.59 -2.98 -7.31 -8.64
Smp_192880.1 0 -2.57 -3.41 -5.24 -6.71
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95
Smp_202700.1 0 -2.94 -2.50 -4.90 -6.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036400.2 SmLINC06892-IBu 0.96 1.04e-08 2.34e-06
Smp_036400.2 Smp_005860.3 0.94 1.51e-07 1.44e-05
Smp_009390.1 Smp_036400.2 0.98 5.55e-11 8.04e-08
Smp_036400.2 Smp_009650.2 0.95 4.14e-08 5.94e-06
Smp_036400.2 Smp_037020.1 0.92 1.17e-06 5.98e-05
Smp_036400.2 Smp_038560.6 0.96 4.29e-09 1.30e-06
Smp_036400.2 Smp_042270.1 0.94 9.27e-08 1.02e-05
Smp_036400.2 Smp_046090.1 0.96 3.00e-09 1.03e-06
Smp_036400.2 Smp_059930.1 0.96 4.38e-09 1.32e-06
Smp_036400.2 Smp_061940.1 0.90 2.93e-06 1.00e-04
Smp_036400.2 Smp_066010.1 0.92 5.85e-07 3.66e-05
Smp_036400.2 Smp_105610.1 0.92 9.07e-07 4.98e-05
Smp_036400.2 Smp_106390.1 0.91 1.83e-06 8.17e-05
Smp_036400.2 Smp_113710.1 0.93 3.37e-07 2.50e-05
Smp_036400.2 Smp_113760.1 0.94 1.18e-07 1.21e-05
Smp_036400.2 Smp_148800.1 0.96 3.40e-09 1.12e-06
Smp_036400.2 Smp_149190.1 0.97 3.22e-10 2.47e-07
Smp_150690.2 Smp_036400.2 0.94 7.18e-08 8.63e-06
Smp_036400.2 Smp_165180.1 0.91 1.26e-06 6.29e-05
Smp_036400.2 Smp_178240.1 0.91 1.46e-06 6.98e-05
Smp_036400.2 Smp_184460.1 0.95 4.17e-08 5.98e-06
Smp_036400.2 Smp_185360.1 0.92 7.39e-07 4.31e-05
Smp_036400.2 Smp_186610.1 0.91 1.55e-06 7.27e-05
Smp_036400.2 Smp_190390.1 0.95 2.22e-08 3.89e-06
Smp_036400.2 Smp_190590.1 0.96 1.33e-08 2.77e-06
Smp_192880.1 Smp_036400.2 0.95 4.92e-08 6.68e-06
Smp_036400.2 Smp_194040.1 0.90 4.84e-06 1.00e-04
Smp_202700.1 Smp_036400.2 0.90 2.63e-06 1.00e-04