Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_036270.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.3 SmLINC00372-IBu 0.95 1.68e-08 3.03e-06
Smp_036270.3 SmLINC01316-IBu 0.85 4.00e-05 7.00e-04
Smp_036270.3 SmLINC02646-IBu 0.85 5.18e-05 8.00e-04
Smp_036270.3 SmLINC04430-IBu 0.84 7.66e-05 1.10e-03
Smp_036270.3 SmLINC05559-IBu 0.88 1.27e-05 3.00e-04
Smp_036270.3 SmLINC06490-IBu 0.81 2.00e-04 2.40e-03
Smp_036270.3 SmLINC06646-IBu 0.87 1.80e-05 4.00e-04
Smp_036270.3 SmLINC06700-IBu 0.92 6.60e-07 3.82e-05
Smp_036270.3 SmLINC06836-IBu 0.94 1.24e-07 1.19e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC00513-IBu 0 6.74 8.35 0.00 3.11
SmLINC00781-IBu 0 6.19 6.44 3.58 2.95
SmLINC01002-IBu 0 3.82 5.68 -2.26 -2.26
SmLINC02626-IBu 0 8.15 9.29 3.73 6.59
SmLINC02970-IBu 0 2.59 3.54 0.54 -1.36
SmLINC03132-IBu 0 3.76 4.91 1.54 -0.47
SmLINC03924-IBu 0 0.69 2.22 -1.76 -2.59
SmLINC03953-IBu 0 1.67 3.25 -2.76 -1.08
SmLINC04003-IBu 0 -0.16 1.42 -3.63 -8.87
SmLINC04007-IBu 0 -1.63 0.45 -8.95 -8.95
SmLINC04065-IBu 0 1.68 2.43 -5.86 -2.73
SmLINC04215-IBu 0 6.59 8.42 5.71 3.29
SmLINC06048-IBu 0 0.79 1.93 -4.19 -7.12
SmLINC06241-IBu 0 2.77 5.19 0.64 -7.79
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
SmLINC06839-IBu 0 -0.39 0.65 -6.55 -6.90
Smp_008910.1 0 -1.29 0.24 -6.54 -6.54
Smp_014660.1 0 1.27 2.34 -5.37 -7.50
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_018590.1 0 0.89 1.74 -2.48 -5.97
Smp_018800.1 0 3.14 4.22 -2.08 -1.80
Smp_019260.2 0 0.65 2.01 -0.64 -4.31
Smp_019940.5 0 1.01 3.12 -6.73 1.95
Smp_024820.1 0 4.10 4.75 1.46 1.82
Smp_027990.1 0 1.00 2.03 -4.13 -5.46
Smp_031770.3 0 0.52 1.55 -9.48 -9.48
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_032320.2 0 -0.17 0.68 -9.42 -9.42
Smp_033670.2 0 1.59 2.15 -4.87 -4.87
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_035200.2 0 2.64 4.29 0.34 1.53
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_049600.3 0 1.80 2.94 -9.17 -1.90
Smp_052290.1 0 1.68 2.86 -1.36 -2.94
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_075290.4 0 0.20 2.62 -2.13 -0.42
Smp_076040.2 0 -0.64 1.55 -9.83 -9.83
Smp_079260.1 0 1.54 2.23 -2.79 -3.15
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_093690.1 0 0.09 0.67 -3.40 -3.42
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099560.1 0 8.15 8.89 -2.27 -2.27
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_103930.1 0 0.87 2.20 -7.48 0.71
Smp_112520.1 0 1.59 3.68 -6.44 -6.44
Smp_120740.1 0 -0.36 1.05 -4.86 -4.75
Smp_123870.1 0 -0.64 -0.72 -4.74 -5.09
Smp_136120.1 0 5.65 6.93 4.13 3.70
Smp_138140.1 0 2.02 2.69 -3.31 -2.76
Smp_139170.1 0 2.45 4.33 0.78 0.06
Smp_139940.1 0 3.07 4.50 -0.39 -2.02
Smp_143180.1 0 1.31 2.18 -4.27 -1.25
Smp_144350.1 0 2.33 4.53 0.32 -0.03
Smp_145950.1 0 1.16 2.62 -4.07 -0.95
Smp_146920.1 0 0.99 1.37 -7.20 -7.20
Smp_148110.1 0 1.60 3.38 -2.98 -3.24
Smp_149220.1 0 0.14 0.72 -3.31 -3.61
Smp_149870.1 0 0.08 0.15 -3.14 -8.77
Smp_151220.1 0 1.28 1.74 -3.16 -3.91
Smp_152900.1 0 -0.24 0.96 -3.27 -3.63
Smp_153210.1 0 3.24 5.11 0.30 -0.00
Smp_153650.1 0 -0.02 1.72 -2.93 -3.55
Smp_155690.1 0 0.49 1.13 -3.13 -4.07
Smp_157280.1 0 4.32 5.40 2.85 1.60
Smp_158680.1 0 0.18 0.75 -3.19 -3.53
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159070.4 0 3.29 5.54 2.90 0.83
Smp_159380.1 0 0.56 1.21 -4.02 -3.82
Smp_160670.1 0 1.07 2.08 -4.35 -3.20
Smp_161270.1 0 1.27 1.64 -8.43 -8.43
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_169500.1 0 1.36 1.90 -2.93 -5.45
Smp_174170.1 0 2.27 3.86 1.11 -0.90
Smp_174750.1 0 1.35 2.65 -1.87 -1.39
Smp_175290.1 0 2.94 5.17 0.92 0.51
Smp_175300.1 0 6.82 9.29 5.85 5.56
Smp_180050.1 0 1.06 0.86 -2.29 -5.29
Smp_180630.1 0 0.12 1.09 -6.32 -9.26
Smp_184370.1 0 -1.11 0.66 -3.32 -4.28
Smp_189180.2 0 -0.25 -0.54 -4.07 -4.89
Smp_190370.1 0 1.12 2.62 -1.76 -2.23
Smp_194110.1 0 0.85 0.42 -9.97 -9.97
Smp_196410.1 0 0.98 1.80 -3.57 -2.94
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.3 SmLINC00372-IBu 0.95 1.68e-08 3.23e-06
Smp_036270.3 SmLINC00513-IBu 0.93 3.75e-07 2.69e-05
Smp_036270.3 SmLINC00781-IBu 0.93 4.18e-07 2.90e-05
Smp_036270.3 SmLINC01002-IBu 0.93 3.35e-07 2.49e-05
Smp_036270.3 SmLINC02626-IBu 0.91 1.94e-06 8.52e-05
Smp_036270.3 SmLINC02970-IBu 0.93 3.56e-07 2.59e-05
Smp_036270.3 SmLINC03132-IBu 0.94 1.37e-07 1.34e-05
Smp_036270.3 SmLINC03924-IBu 0.90 3.16e-06 1.00e-04
Smp_036270.3 SmLINC03953-IBu 0.90 2.76e-06 1.00e-04
Smp_036270.3 SmLINC04003-IBu 0.92 7.09e-07 4.19e-05
Smp_036270.3 SmLINC04007-IBu 0.90 3.44e-06 1.00e-04
Smp_036270.3 SmLINC04065-IBu 0.93 4.94e-07 3.25e-05
Smp_036270.3 SmLINC04215-IBu 0.92 1.11e-06 5.76e-05
Smp_036270.3 SmLINC06048-IBu 0.98 1.10e-10 1.24e-07
Smp_036270.3 SmLINC06241-IBu 0.94 8.85e-08 9.95e-06
Smp_036270.3 SmLINC06700-IBu 0.92 6.60e-07 3.98e-05
Smp_036270.3 SmLINC06836-IBu 0.94 1.24e-07 1.25e-05
Smp_036270.3 SmLINC06839-IBu 0.90 3.95e-06 1.00e-04
Smp_008910.1 Smp_036270.3 0.91 2.00e-06 8.70e-05
Smp_014660.1 Smp_036270.3 0.92 8.24e-07 4.66e-05
Smp_036270.3 Smp_017650.1 0.92 7.82e-07 4.49e-05
Smp_018590.1 Smp_036270.3 0.95 1.78e-08 3.36e-06
Smp_036270.3 Smp_018800.1 0.93 2.65e-07 2.11e-05
Smp_019260.2 Smp_036270.3 0.91 2.03e-06 8.80e-05
Smp_019940.5 Smp_036270.3 0.92 1.14e-06 5.86e-05
Smp_024820.1 Smp_036270.3 0.94 7.57e-08 8.95e-06
Smp_027990.1 Smp_036270.3 0.95 3.03e-08 4.81e-06
Smp_031770.3 Smp_036270.3 0.96 2.43e-09 9.02e-07
Smp_036270.3 Smp_032120.1 0.95 4.23e-08 6.03e-06
Smp_032320.2 Smp_036270.3 0.90 3.20e-06 1.00e-04
Smp_033670.2 Smp_036270.3 0.90 3.78e-06 1.00e-04
Smp_034840.1 Smp_036270.3 0.94 8.92e-08 1.00e-05
Smp_035200.2 Smp_036270.3 0.92 7.75e-07 4.46e-05
Smp_049600.3 Smp_036270.3 0.97 2.05e-09 8.10e-07
Smp_052290.1 Smp_036270.3 0.95 3.20e-08 5.00e-06
Smp_036270.3 Smp_059340.3 0.94 9.45e-08 1.04e-05
Smp_059530.1 Smp_036270.3 0.90 4.12e-06 1.00e-04
Smp_062070.1 Smp_036270.3 0.94 1.49e-07 1.42e-05
Smp_062610.2 Smp_036270.3 0.94 1.88e-07 1.67e-05
Smp_063650.3 Smp_036270.3 0.94 9.65e-08 1.05e-05
Smp_075290.4 Smp_036270.3 0.91 1.34e-06 6.56e-05
Smp_076040.2 Smp_036270.3 0.94 1.32e-07 1.31e-05
Smp_079260.1 Smp_036270.3 0.93 2.32e-07 1.92e-05
Smp_036270.3 Smp_083380.2 0.91 2.30e-06 9.60e-05
Smp_036270.3 Smp_084940.2 0.92 9.19e-07 5.02e-05
Smp_036270.3 Smp_093690.1 0.90 3.47e-06 1.00e-04
Smp_098370.1 Smp_036270.3 0.91 2.48e-06 1.00e-04
Smp_099560.1 Smp_036270.3 0.96 2.39e-09 8.95e-07
Smp_103540.1 Smp_036270.3 0.95 4.09e-08 5.90e-06
Smp_103930.1 Smp_036270.3 0.92 6.67e-07 4.01e-05
Smp_036270.3 Smp_112520.1 0.91 1.58e-06 7.39e-05
Smp_120740.1 Smp_036270.3 0.91 2.28e-06 9.55e-05
Smp_123870.1 Smp_036270.3 0.93 3.41e-07 2.52e-05
Smp_136120.1 Smp_036270.3 0.95 3.29e-08 5.08e-06
Smp_138140.1 Smp_036270.3 0.92 8.69e-07 4.83e-05
Smp_139170.1 Smp_036270.3 0.93 4.15e-07 2.88e-05
Smp_036270.3 Smp_139940.1 0.94 1.09e-07 1.15e-05
Smp_143180.1 Smp_036270.3 0.94 1.07e-07 1.13e-05
Smp_036270.3 Smp_144350.1 0.91 1.88e-06 8.35e-05
Smp_145950.1 Smp_036270.3 0.90 4.41e-06 1.00e-04
Smp_036270.3 Smp_146920.1 0.90 3.04e-06 1.00e-04
Smp_148110.1 Smp_036270.3 0.94 1.45e-07 1.39e-05
Smp_149220.1 Smp_036270.3 0.90 3.82e-06 1.00e-04
Smp_149870.1 Smp_036270.3 0.97 1.21e-09 5.77e-07
Smp_036270.3 Smp_151220.1 0.92 8.91e-07 4.91e-05
Smp_152900.1 Smp_036270.3 0.91 1.68e-06 7.69e-05
Smp_153210.1 Smp_036270.3 0.93 3.23e-07 2.42e-05
Smp_153650.1 Smp_036270.3 0.93 3.02e-07 2.32e-05
Smp_155690.1 Smp_036270.3 0.92 7.49e-07 4.35e-05
Smp_157280.1 Smp_036270.3 0.96 6.25e-09 1.67e-06
Smp_036270.3 Smp_158680.1 0.90 2.76e-06 1.00e-04
Smp_159070.3 Smp_036270.3 0.93 3.15e-07 2.38e-05
Smp_036270.3 Smp_159070.4 0.92 6.60e-07 3.98e-05
Smp_036270.3 Smp_159380.1 0.93 3.26e-07 2.44e-05
Smp_036270.3 Smp_160670.1 0.93 1.96e-07 1.72e-05
Smp_161270.1 Smp_036270.3 0.90 4.16e-06 1.00e-04
Smp_168800.1 Smp_036270.3 0.93 2.89e-07 2.24e-05
Smp_169500.1 Smp_036270.3 0.91 2.14e-06 9.14e-05
Smp_174170.1 Smp_036270.3 0.92 6.62e-07 3.99e-05
Smp_174750.1 Smp_036270.3 0.95 4.23e-08 6.03e-06
Smp_175290.1 Smp_036270.3 0.90 4.07e-06 1.00e-04
Smp_175300.1 Smp_036270.3 0.91 1.42e-06 6.83e-05
Smp_180050.1 Smp_036270.3 0.94 1.61e-07 1.50e-05
Smp_180630.1 Smp_036270.3 0.96 1.12e-08 2.46e-06
Smp_184370.1 Smp_036270.3 0.94 1.66e-07 1.53e-05
Smp_189180.2 Smp_036270.3 0.94 1.42e-07 1.37e-05
Smp_190370.1 Smp_036270.3 0.91 1.42e-06 6.84e-05
Smp_194110.1 Smp_036270.3 0.91 2.10e-06 9.01e-05
Smp_196410.1 Smp_036270.3 0.95 5.72e-08 7.39e-06
Smp_200120.1 Smp_036270.3 0.94 9.26e-08 1.02e-05