Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_036270.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_036270.2 0 -0.92 -1.44 -5.86 -5.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.2 SmLINC00001-IBu -0.80 2.00e-04 2.90e-03
Smp_036270.2 SmLINC00004-IBu -0.82 1.00e-04 2.10e-03
Smp_036270.2 SmLINC00282-IBu 0.80 3.00e-04 3.20e-03
Smp_036270.2 SmLINC00369-IBu -0.81 1.00e-04 2.10e-03
Smp_036270.2 SmLINC00376-IBu -0.85 4.75e-05 8.00e-04
Smp_036270.2 SmLINC01084-IBu -0.81 2.00e-04 2.70e-03
Smp_036270.2 SmLINC01431-IBu -0.84 7.43e-05 1.10e-03
Smp_036270.2 SmLINC01637-IBu 0.83 1.00e-04 1.40e-03
Smp_036270.2 SmLINC02084-IBu -0.83 1.00e-04 1.60e-03
Smp_036270.2 SmLINC02255-IBu 0.92 9.81e-07 5.06e-05
Smp_036270.2 SmLINC02630-IBu 0.90 3.72e-06 1.00e-04
Smp_036270.2 SmLINC02657-IBu 0.89 5.10e-06 1.00e-04
Smp_036270.2 SmLINC03927-IBu -0.80 3.00e-04 3.40e-03
Smp_036270.2 SmLINC04421-IBu -0.87 2.24e-05 4.00e-04
Smp_036270.2 SmLINC05284-IBu 0.90 2.93e-06 1.00e-04
Smp_036270.2 SmLINC05604-IBu -0.81 2.00e-04 2.50e-03
Smp_036270.2 SmLINC05720-IBu 0.82 1.00e-04 1.80e-03
Smp_036270.2 SmLINC06535-IBu 0.84 8.69e-05 1.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.2 0 -0.92 -1.44 -5.86 -5.63
Smp_092880.1 0 -1.02 -1.51 -9.62 -13.17

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_092880.1 Smp_036270.2 0.93 5.13e-07 3.34e-05