Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_036250.1 Data

Correlation between Smp_036250.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_036250.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_036250.1 0 -3.24 -3.82 -4.15 -3.72

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036250.1 SmLINC02678-IBu 0.91 2.48e-06 9.81e-05
Smp_036250.1 SmLINC02888-IBu 0.82 1.00e-04 1.80e-03
Smp_036250.1 SmLINC04957-IBu 0.91 1.79e-06 7.78e-05
Smp_036250.1 SmLINC05989-IBu 0.81 1.00e-04 2.10e-03
Smp_036250.1 SmLINC06128-IBu 0.90 4.03e-06 1.00e-04
Smp_036250.1 SmLINC06890-IBu 0.85 5.80e-05 9.00e-04
Smp_036250.1 SmLINC06903-IBu 0.85 5.67e-05 9.00e-04

Correlation between Smp_036250.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_036250.1 0 -3.24 -3.82 -4.15 -3.72
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036250.1 Smp_018880.1 0.92 6.00e-07 3.73e-05
Smp_032980.1 Smp_036250.1 0.95 2.79e-08 4.55e-06
Smp_055770.1 Smp_036250.1 0.97 1.59e-09 6.86e-07
Smp_036250.1 Smp_071380.2 0.93 1.99e-07 1.73e-05
Smp_036250.1 Smp_079970.1 0.97 1.74e-09 7.26e-07
Smp_036250.1 Smp_102670.1 0.93 3.02e-07 2.31e-05
Smp_036250.1 Smp_133770.1 0.90 3.05e-06 1.00e-04
Smp_036250.1 Smp_134410.1 0.94 1.83e-07 1.63e-05
Smp_036250.1 Smp_152780.1 0.98 1.27e-11 3.20e-08
Smp_036250.1 Smp_153240.1 0.90 2.69e-06 1.00e-04
Smp_036250.1 Smp_169190.1 0.94 8.19e-08 9.44e-06